PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023552941.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 314aa MW: 35095.2 Da PI: 7.041

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023552941.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.3	3.7e-18	9	56	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd +l ++ q+G+++W++I++ g+ R++k+c++rw +yl XP_023552941.1 9 RGQWTPEEDNKLSSYIVQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 56 89********************************************97 PP
2	Myb_DNA-binding	46.5	8.6e-15	63	105	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ E++ +v+++ G++ W++Ia+ ++ gRt++++k++w++ XP_023552941.1 63 GQFSDMEEQTIVKLHSVVGNR-WSLIAAQLP-GRTDNDVKNHWNT 105 789****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence
KXEKENVKRG QWTPEEDNKL SSYIVQHGTR NWRLIPKNAG LQRCGKSCRL RWTNYLRPDL 60 KHGQFSDMEE QTIVKLHSVV GNRWSLIAAQ LPGRTDNDVK NHWNTKLKKK LSGMGIDPVT 120 HKPFSHLMAE IATTLAPPQV SHLAEAALGC FKDEMLHLLT KKRVDFQLQQ ANVPPGSTAG 180 TYIHGKQNEK DGTVENIKLG LSRAIQQPDL ISPYKPWNST DAVGTSNCFP GSTSEFQYAP 240 LSFGTEGDGS SWSQSLCTGS TCTAEQQGQL HDILEETEEE LSESGKEMRN RTSIFSSNSV 300 LWDLPCDDLM NPIV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56110.1	1e-112	MYB family protein