PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023552754.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 638aa MW: 69826.1 Da PI: 5.7152

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023552754.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.4	1.1e-12	456	501	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L Av YI++L XP_023552754.1 456 NHVEAERQRREKLNQKFYALRAVVPNV-----SKMDKASLLGDAVSYINEL 501 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 638 aa Download sequence
MTDYRLSTMN LWTDENASLM DAFMNSDLSS YWAPSAASSH SLHNQPPPQS SASTSTPPPD 60 PPKSVAVFNQ ETLQQRLQAL IDGARESWTY AIFWQSSYDY PDGSVLGWGD GYYKGEEDKG 120 KGKAKVVTSA AEQAHRKKVL RDLNSLISGS AAGPDDAVDE EVTDTEWFFL VSMTQSFVNG 180 VGLPSQAFFN STPIWISGAD GLSASACERA RQGKVFGLQT MVCIPSPNGV VEMGSTELIH 240 RTSDLMNKVK ILFNFNNLET SSWISGTTAA ASTADEGEND PSSMWISEPS STIATTVPSG 300 DVPRKLTQSE NQKQSQSFLN FSDYGFESNP SKSITTDTTT TTTTTNTPSF KPESGGMLNF 360 GNGSLFSSHS QYITDEQNEK KRSPPSRSSN DEGILSFTSG VILPSSGKVK SGDSDHSDLE 420 ASVIREVDSC TKSIEPEKRP RKRGRKPANG REEPLNHVEA ERQRREKLNQ KFYALRAVVP 480 NVSKMDKASL LGDAVSYINE LKSKLQIIET EKTEMGKHLE FIKKEMGGKD LGHYTNTIDQ 540 DLKTGNRKVM EIEIEVKIMG WDAMIRIQSS KKNHPAARLM TALKDLDLEM LHASVSVVND 600 LMIQQATVKM GSRCYTQEQL KMALIARVGG GGGGGGMM

Sequence ? help Back to Top

Protein Sequence Length: 638 aa Download sequence

MTDYRLSTMN LWTDENASLM DAFMNSDLSS YWAPSAASSH SLHNQPPPQS SASTSTPPPD  60
PPKSVAVFNQ ETLQQRLQAL IDGARESWTY AIFWQSSYDY PDGSVLGWGD GYYKGEEDKG  120
KGKAKVVTSA AEQAHRKKVL RDLNSLISGS AAGPDDAVDE EVTDTEWFFL VSMTQSFVNG  180
VGLPSQAFFN STPIWISGAD GLSASACERA RQGKVFGLQT MVCIPSPNGV VEMGSTELIH  240
RTSDLMNKVK ILFNFNNLET SSWISGTTAA ASTADEGEND PSSMWISEPS STIATTVPSG  300
DVPRKLTQSE NQKQSQSFLN FSDYGFESNP SKSITTDTTT TTTTTNTPSF KPESGGMLNF  360
GNGSLFSSHS QYITDEQNEK KRSPPSRSSN DEGILSFTSG VILPSSGKVK SGDSDHSDLE  420
ASVIREVDSC TKSIEPEKRP RKRGRKPANG REEPLNHVEA ERQRREKLNQ KFYALRAVVP  480
NVSKMDKASL LGDAVSYINE LKSKLQIIET EKTEMGKHLE FIKKEMGGKD LGHYTNTIDQ  540
DLKTGNRKVM EIEIEVKIMG WDAMIRIQSS KKNHPAARLM TALKDLDLEM LHASVSVVND  600
LMIQQATVKM GSRCYTQEQL KMALIARVGG GGGGGGMM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	438	446	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	1e-178	bHLH family protein