PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023552562.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

NAC

Protein Properties

Length: 680aa MW: 75587 Da PI: 6.7868

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023552562.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.2	5.8e-52	92	219	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp GfrF+Ptd+el+++yL+ k++g++ ++ vi+evd++k+ePwdLp + +k++++ew+fF+++d+ky++g+r +rat +g+Wkatgkd++++ XP_023552562.1 92 LPLGFRFRPTDQELIDYYLRSKINGNHQDV-CVIREVDVCKWEPWDLPdlSILKTKDREWFFFCPQDRKYPNGHRLKRATVAGFWKATGKDRKIK 185 699**********************999.88**********96447788999*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s +++l+g+kktLvfykgrapkg++t+Wv+heyr XP_023552562.1 186 S-GTKLIGMKKTLVFYKGRAPKGKRTNWVVHEYRT 219 .99****************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence
MNNINSRPDA FFILVNYRNK IKKSNSLLVT VFSSFSLKTK SHSLSPLSYS LFIKTKNLSG 60 RPVTSFPLFF FIFANPSPLF SPSMAVLTLN SLPLGFRFRP TDQELIDYYL RSKINGNHQD 120 VCVIREVDVC KWEPWDLPDL SILKTKDREW FFFCPQDRKY PNGHRLKRAT VAGFWKATGK 180 DRKIKSGTKL IGMKKTLVFY KGRAPKGKRT NWVVHEYRTT LKELDGTNPG QNAFVLCRLF 240 KKQDESIEGS NGDEAEAAIS SPTTTESSPG PGDSHSEPIL PLDSPSLQRQ AEISDGVLSE 300 TVEHTDGSVD IHGFDSYNVE FSLQMDPHPD EERKFSGPEN QPLDSKLYSP LHSQLQAELG 360 SSCIYYSDSN YLNYGANPNA EQLQIGAEDF DFIHQMLDSF VYNSDDYALE DQQESMSLSE 420 FPNNSMASLD NRAFGKVEAD NGKALQAMPD FESSICLEDI DRKTPIIDHL GTAAPEQGLL 480 YNPSGSLQES YNHLSVVGNT DASTGIQRMS RRPRSVQQPN EFSTFQGIAP RRLRLQRKLV 540 APSSCSSNTC SESSRWQDDD PPSISSKVKK ASENKTTGGD GGSVAATVDV VKQPQAMPDA 600 DSGVGSSKAS QEVSAKLVAS DSPTIDFLTG KRRLVTALLP SILSYVSVVR LVVVALSIIF 660 ISIWKCRNRE QRGYLVSPFC

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence

MNNINSRPDA FFILVNYRNK IKKSNSLLVT VFSSFSLKTK SHSLSPLSYS LFIKTKNLSG  60
RPVTSFPLFF FIFANPSPLF SPSMAVLTLN SLPLGFRFRP TDQELIDYYL RSKINGNHQD  120
VCVIREVDVC KWEPWDLPDL SILKTKDREW FFFCPQDRKY PNGHRLKRAT VAGFWKATGK  180
DRKIKSGTKL IGMKKTLVFY KGRAPKGKRT NWVVHEYRTT LKELDGTNPG QNAFVLCRLF  240
KKQDESIEGS NGDEAEAAIS SPTTTESSPG PGDSHSEPIL PLDSPSLQRQ AEISDGVLSE  300
TVEHTDGSVD IHGFDSYNVE FSLQMDPHPD EERKFSGPEN QPLDSKLYSP LHSQLQAELG  360
SSCIYYSDSN YLNYGANPNA EQLQIGAEDF DFIHQMLDSF VYNSDDYALE DQQESMSLSE  420
FPNNSMASLD NRAFGKVEAD NGKALQAMPD FESSICLEDI DRKTPIIDHL GTAAPEQGLL  480
YNPSGSLQES YNHLSVVGNT DASTGIQRMS RRPRSVQQPN EFSTFQGIAP RRLRLQRKLV  540
APSSCSSNTC SESSRWQDDD PPSISSKVKK ASENKTTGGD GGSVAATVDV VKQPQAMPDA  600
DSGVGSSKAS QEVSAKLVAS DSPTIDFLTG KRRLVTALLP SILSYVSVVR LVVVALSIIF  660
ISIWKCRNRE QRGYLVSPFC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24590.2	1e-89	NAC family protein