PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023551800.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 446aa MW: 49090.1 Da PI: 8.0799

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023551800.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.6	4.4e-13	269	314	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ K++Ka+ L Av YI++L XP_023551800.1 269 NHVEAERQRRQKLNNRFYALRSVVPNV-----SKMDKASLLADAVVYINEL 314 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MDDFSISSSS SPNSSAHTIQ QRLQFILHNL PQWFAYSIFW LASKDSAGNL IFSWSDGHFR 60 GTRNGGGSQL ISFGFDDVAV DRVEAGDFSD LEGYYTISIS QMYGGVDNVV GRVFDSSAYI 120 WLTIDESLHL YECDRVKEAR LRGIQTLVFV STSDGVLELG SSELIKEDWS LAQFAKSLFG 180 TFSVSSTQFK QKDHVGVGGG GMIQLQAPPC SGIVKREMNG GRGGGGSSSD SLSDNSDGNF 240 LSMVDNNNVG NKKGKRQAKN KAESTMPVNH VEAERQRRQK LNNRFYALRS VVPNVSKMDK 300 ASLLADAVVY INELKAKVQK MESKLKQSQH QASSSLSNAF DQKRSGISTI EQTVSSTSYA 360 MNNGYNNNTV EVQLVGAEAI VRVHCKDENY PSARLMNVFK DLGLQVRQAS LSSVNDLMLQ 420 DVVIRVPQGL ALREKTLRTA ILQRLE

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MDDFSISSSS SPNSSAHTIQ QRLQFILHNL PQWFAYSIFW LASKDSAGNL IFSWSDGHFR  60
GTRNGGGSQL ISFGFDDVAV DRVEAGDFSD LEGYYTISIS QMYGGVDNVV GRVFDSSAYI  120
WLTIDESLHL YECDRVKEAR LRGIQTLVFV STSDGVLELG SSELIKEDWS LAQFAKSLFG  180
TFSVSSTQFK QKDHVGVGGG GMIQLQAPPC SGIVKREMNG GRGGGGSSSD SLSDNSDGNF  240
LSMVDNNNVG NKKGKRQAKN KAESTMPVNH VEAERQRRQK LNNRFYALRS VVPNVSKMDK  300
ASLLADAVVY INELKAKVQK MESKLKQSQH QASSSLSNAF DQKRSGISTI EQTVSSTSYA  360
MNNGYNNNTV EVQLVGAEAI VRVHCKDENY PSARLMNVFK DLGLQVRQAS LSSVNDLMLQ  420
DVVIRVPQGL ALREKTLRTA ILQRLE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	220	226	GGRGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46760.1	2e-39	bHLH family protein