PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023551672.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | ARF | ||||||||
Protein Properties | Length: 684aa MW: 75624.9 Da PI: 6.2417 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.4 | 5.8e-23 | 122 | 223 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD++vF + + XP_023551672.1 122 FAKTLTQSDANNGGGFSVPRYCAETMfprldysAEPPVQ--TILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RAE 212 89*********************999****986445444..8999*********************************************..448 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+++v+r+ XP_023551672.1 213 TGDLFIGVRRA 223 9999****996 PP | |||||||
2 | Auxin_resp | 99.4 | 4.9e-33 | 281 | 364 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa a+++++Fe+vY+P ++t+eFvvk++ +++a++v++ + mRfkm fet+dss++++ +Gt+++++ +dpvrWp+S+Wr+L+ XP_023551672.1 281 AAMLAASGKPFEIVYYPCTGTPEFVVKASCLRSAMQVHWYPAMRFKMPFETKDSSRISWfMGTISSIQVADPVRWPDSPWRMLQ 364 5778999***************************************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 684 aa Download sequence |
MTRGMDSVVE PMRNHEKYLD SQLWHACAGG LIELPTIDSK VVYFPQGHAE HAQENVDFGV 60 AQIPSLIPCR VSGIRHMADS ETDEVFANIR LIPLRNNEFS LDDDDELLGH NDIRTREKPA 120 SFAKTLTQSD ANNGGGFSVP RYCAETMFPR LDYSAEPPVQ TILAKDVHGE IWKFRHIYRG 180 TPRRHLLTTG WSNFVNQKKL VAGDSIVFLR AETGDLFIGV RRAKRGNGYG IDYETGWDPT 240 NSASPLVGYS DFMRENEGRL VRRISNGNSS GRVTVESVIE AAMLAASGKP FEIVYYPCTG 300 TPEFVVKASC LRSAMQVHWY PAMRFKMPFE TKDSSRISWF MGTISSIQVA DPVRWPDSPW 360 RMLQVAWDEP DLLQNVKSIN PWLVEVVVNM PAIHVSPFSP PRKKQRFHPA ETAVFGHLPM 420 PSFSTNFFET TSSLQSVTGN NIPAGIQGAR HTQFGLSSPD FQLSKLNLGP CSAGFKHLDE 480 ATPLPGSPGE NMFGGMKSPD NSHWLTMGNN TESSKDSKET KPDHIILFGQ LILPNQLISN 540 SCSADTTNAS YENQGKSSNP SDGSGLSSQQ NGSLENSSEG GSTSYNGHEK TGFSLNTGQC 600 KVFMEFEDIG RTLNLSLLRS YDELYGKLAN MFGLGSSEML NCVLYEDALG TTKQAGDEPF 660 STFLKTARKL TILTDSRSSD NSKT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | ARF family protein |