PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023551336.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 1395aa MW: 153726 Da PI: 7.2956

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023551336.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.3	3.6e-08	967	1007	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT E l+++av +G++ ++ I+ ++g ++ qck ++ XP_023551336.1 967 YWTDGEKSLFIEAVSVYGKN-FSMISTHVG-SKSTDQCKVFFS 1007 5***************99.*****.******8776 PP

Sequence ? help Back to Top
Protein Sequence Length: 1395 aa Download sequence
MPPEPLPWDR KDFFKERKHE RSEFLGPVPR WRDSSSHGSR EFSRWGSGDF RRPPGHGRQG 60 GWHVFSDEYG HGYGPSMSFN NKMLENVSSR PSVSHGDGKY PRNGRESRSF SQRDWKGHSW 120 TTSNGSTNSG GRLQHDLNYD QRSVNDMLIY PSHSHSDFVN SRDKVKGQHD QVDDVNGLGT 180 NQRRDREYSV SSSGWKPLKW TRSGALSSRT STSGHSSSTR IAGALDSNEA KSETVLKNAP 240 QNLSPSADSG ECAMSSLPYD EATVRKKPRL GWGEGLAKYE KKKVEVPDAT AFTNVHAEST 300 HSLNSSLIEK GPRCSGFSDR TSPAPHSFVI SGSSPGGDEK SCGKASIDND VSDLHGSPGS 360 GFQNQYEGTS SVEKLNDFSI AKLCAPLIPL LQSSDSISED SSFMSSTALS KLLIYKKEIS 420 KVLETTESEI DLLENELKGL ISDSKGYFSF PLASRSFLEG DKYFDEKNDV TNTVATMPIT 480 SANTISKPME HSTSDLEEVH ADVKGKDRSV RLDVKESVIT KENLTISVCS VKDNVVASVD 540 NNMIIKSEDV TLEPISSDIY EFADEKGGDS VLDLILASNK ESACKASEAL TRLLPSNEHK 600 LDIWSTNAFS QNQCLVKERF AKRKRLLKFK ERVITLKYRA YQSLWKESFH VPPVRKLRAK 660 SQKKYQLSLW TNYSGYQKNR SSIRFRMPSP GNLNHSVSNA EILKHMSMQL SSPQIKQYRT 720 TLKMPALILD QKDKMASRFI SNNGLVENPC AVEKERAMIN PWSSEEKEVF MEKLECFGKD 780 FGKIASFLDH KTTADCIEFY YKNHKSDCFE KTKKLEFGKK AKSTGNYLMT TGKKWNSEAN 840 AASLDMLGAA MVRAHKYSSS RSGGRTAYRT TQFDDDLSER AKSFHGFGNE REKVAADVLA 900 GICGSLSSEA LGSCVTSNFD RGDGSQDLKC KKGGATTVLR RITNNVQQCV DDEIFSDESC 960 GEMDPSYWTD GEKSLFIEAV SVYGKNFSMI STHVGSKSTD QCKVFFSKAR KCLGLDVLCS 1020 AKKMPEDGNG HGINGGDCEA GVDTKDAFPC ERVSSQMVDD LPKSVTCISG GVTESKNLQS 1080 IHQEVKESNP SSKTCSNAAV DAMVSDDAYN RKDGFLSGFD DDCQSVNSTH DKNGLVLEQR 1140 HTVVSDETAK EQGISALVAA LVGNDSNAET KRVSVDTSSD RSDKAHSHTA DNSSMPLNTR 1200 VISLSKEEQG CHHVRVHSRS LSDSEQSSRN GDLKLFGQIL THSSSVPSSK SGSSENGNRT 1260 ELHHKLKCRL KVNSHGNLIT AKFDRKNSSG QEEDAPSRSY GFWDGSRMRT GFSSLPDPNT 1320 LLSRYPTFDH CSKTASLIEQ QPICNGQKSN SNQMSEVNSS KEGIIVGKNC NDDDDDDASD 1380 TKLHCNKAAE GGGGS

Sequence ? help Back to Top

Protein Sequence Length: 1395 aa Download sequence

MPPEPLPWDR KDFFKERKHE RSEFLGPVPR WRDSSSHGSR EFSRWGSGDF RRPPGHGRQG  60
GWHVFSDEYG HGYGPSMSFN NKMLENVSSR PSVSHGDGKY PRNGRESRSF SQRDWKGHSW  120
TTSNGSTNSG GRLQHDLNYD QRSVNDMLIY PSHSHSDFVN SRDKVKGQHD QVDDVNGLGT  180
NQRRDREYSV SSSGWKPLKW TRSGALSSRT STSGHSSSTR IAGALDSNEA KSETVLKNAP  240
QNLSPSADSG ECAMSSLPYD EATVRKKPRL GWGEGLAKYE KKKVEVPDAT AFTNVHAEST  300
HSLNSSLIEK GPRCSGFSDR TSPAPHSFVI SGSSPGGDEK SCGKASIDND VSDLHGSPGS  360
GFQNQYEGTS SVEKLNDFSI AKLCAPLIPL LQSSDSISED SSFMSSTALS KLLIYKKEIS  420
KVLETTESEI DLLENELKGL ISDSKGYFSF PLASRSFLEG DKYFDEKNDV TNTVATMPIT  480
SANTISKPME HSTSDLEEVH ADVKGKDRSV RLDVKESVIT KENLTISVCS VKDNVVASVD  540
NNMIIKSEDV TLEPISSDIY EFADEKGGDS VLDLILASNK ESACKASEAL TRLLPSNEHK  600
LDIWSTNAFS QNQCLVKERF AKRKRLLKFK ERVITLKYRA YQSLWKESFH VPPVRKLRAK  660
SQKKYQLSLW TNYSGYQKNR SSIRFRMPSP GNLNHSVSNA EILKHMSMQL SSPQIKQYRT  720
TLKMPALILD QKDKMASRFI SNNGLVENPC AVEKERAMIN PWSSEEKEVF MEKLECFGKD  780
FGKIASFLDH KTTADCIEFY YKNHKSDCFE KTKKLEFGKK AKSTGNYLMT TGKKWNSEAN  840
AASLDMLGAA MVRAHKYSSS RSGGRTAYRT TQFDDDLSER AKSFHGFGNE REKVAADVLA  900
GICGSLSSEA LGSCVTSNFD RGDGSQDLKC KKGGATTVLR RITNNVQQCV DDEIFSDESC  960
GEMDPSYWTD GEKSLFIEAV SVYGKNFSMI STHVGSKSTD QCKVFFSKAR KCLGLDVLCS  1020
AKKMPEDGNG HGINGGDCEA GVDTKDAFPC ERVSSQMVDD LPKSVTCISG GVTESKNLQS  1080
IHQEVKESNP SSKTCSNAAV DAMVSDDAYN RKDGFLSGFD DDCQSVNSTH DKNGLVLEQR  1140
HTVVSDETAK EQGISALVAA LVGNDSNAET KRVSVDTSSD RSDKAHSHTA DNSSMPLNTR  1200
VISLSKEEQG CHHVRVHSRS LSDSEQSSRN GDLKLFGQIL THSSSVPSSK SGSSENGNRT  1260
ELHHKLKCRL KVNSHGNLIT AKFDRKNSSG QEEDAPSRSY GFWDGSRMRT GFSSLPDPNT  1320
LLSRYPTFDH CSKTASLIEQ QPICNGQKSN SNQMSEVNSS KEGIIVGKNC NDDDDDDASD  1380
TKLHCNKAAE GGGGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-122	MYB family protein