PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023551198.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 288aa    MW: 33678.7 Da    PI: 10.2085
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023551198.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-172267147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed++l ++v+q+G  +W++Ia++++ gR++k+c++rw++ 
   XP_023551198.1 22 RGHWRPAEDQKLRRLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 67
                     899*****************************.***********996 PP
2Myb_DNA-binding60.34.2e-1974117146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
   XP_023551198.1  74 RKPFSEEEEERLLAAHRIHGNK-WSLIARLFP-GRTDNAVKNHWHV 117
                      789*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MIMKDSGDLH VYDHEYKSSC PRGHWRPAED QKLRRLVEQY GAQNWNSIAE KLQGRSGKSC  60
RLRWFNQLDP RIIRKPFSEE EEERLLAAHR IHGNKWSLIA RLFPGRTDNA VKNHWHVIMA  120
RKQLEQSKLP KRTHQHFPVT SSNFLGNQTE SSSLDRRQFS TTILVSDNNR SHKDGMVWNF  180
RQSLKGYSDH NNIPVLHRHY YPNYSSKYAN FRTSPSSARF CFPTAKIPFG VFEFGSTSTT  240
PLVKFMANTD NHHRHHHLHA QEQRQEQESL NNDKDTPFID FLGVGISS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.15e-63MYB family protein