PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023550938.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 261aa MW: 29834.4 Da PI: 6.9789

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023550938.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.8	1.1e-07	45	88	3	44
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT Ed+l+ +a + + +W ++a +++ g+++ ++k+++ XP_023550938.1 45 QWTRLEDKLFEEALVVVPENlpdRWQRVADHVP-GKSPWEVKDHY 88 6***************99*********.********9 PP
2	Myb_DNA-binding	44.2	4.6e-14	144	188	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + k++G+g+W++I+r + +Rt+ q+ s+ qky XP_023550938.1 144 PWTEEEHRLFLLGLKKFGKGDWRSISRNVVITRTPTQVASHAQKY 188 8***************************99**********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence
MRNLQETDSF QSRNPINPFF FLSFLFMVVM SHDSRWTNMT QSSTQWTRLE DKLFEEALVV 60 VPENLPDRWQ RVADHVPGKS PWEVKDHYEA LVHDVLEIDS GRVELPSYAD ETAGGLPEWD 120 SSGQISFGTR AKAGGDNERK KGTPWTEEEH RLFLLGLKKF GKGDWRSISR NVVITRTPTQ 180 VASHAQKYFL RQNSGKKERK RSSIHDITTV DNNSIPMPID PNWISPAPNP TVQSSMQQVS 240 PTGHLQDQGG SFGFQNYRFP M

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	2e-71	MYB family protein