PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023549985.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MIKC_MADS
Protein Properties Length: 215aa    MW: 24994.8 Da    PI: 9.6281
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023549985.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.51.1e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+s+
  XP_023549985.1  9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSN 59
                    79***********************************************95 PP
2K-box65.42e-22941722098
           K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     ++  + k++e L+ ++R+llG +L+s+s+ eLqqLe+qLe+sl+kiRs+K+++l+e+i +l++ ek l een aL+ k+
  XP_023549985.1  94 DSCTITKKLEHLEVSKRKLLGGGLDSCSIDELQQLERQLERSLSKIRSRKYQILKEEIMKLKEEEKLLLEENAALQVKV 172
                     4446899********************************************************************9886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFSNF  60
SMNKTIDRYQ NRTKDLMSSN NTAVEDLQLE KELDSCTITK KLEHLEVSKR KLLGGGLDSC  120
SIDELQQLER QLERSLSKIR SRKYQILKEE IMKLKEEEKL LLEENAALQV KVGRESLKKR  180
ETKQRSESKE QDIMDVETEL FIGLPERRTT TNGFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.12e-59MIKC_MADS family protein