PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023549843.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 728aa MW: 81553.8 Da PI: 4.5638

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023549843.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.9	7.4e-11	576	619	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r +W++ + e++++av+q+G++ + I + ++ gRt+ q+k+++ + XP_023549843.1 576 RTKWSKHDTERFYEAVRQFGTD-FCMIQQLFP-GRTRHQIKLKFKN 619 789*****************.*****.********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 728 aa Download sequence
MDPFDEILSD PGFTSRTGGR FQPKIKPRPK KQTLAPQLST VSQDKKGTTS DAKSCHDGRG 60 NTKSIKSSSQ LPVIEENKES EDDLLLATVD CTLLDLDSCG GILPSGSTID GPVGVENLTD 120 DSKNSGILNY SHSSASRAHE ATVLGQSGLG SIQPEDGHSN DGKIAGQNTD VFYELEWLDD 180 FHSQPKNEAD PSSLKQATIS NEDGDLDKQR LEVEECGAGA NITRDTISSG TTTPSEQPAC 240 KYIPKPKMRI AGDSCTQSSQ PEISNTLPPS PQVISCDTRC MHEASIGTHS DGVLNDSSIN 300 FDDYSPVNQH IEAPVNVESL AYDSYGDILV DDFNSDDQDE MLREEGGKNG EEDPSSRSNM 360 SQQQEMFPPV GEEIEHSKTS RKLRQQVSHQ LDDPEDGVDD FPSERFSNCD IHGDGYKKNE 420 TSKGRRGTKT KTKSLKPSSD NEKPTRKRKE ANKAVPDLQA EKRPKKFSHS TRRNRRQVNK 480 VLLETPEDEI DFQKISFRDL IIYHEHKEKL EKKEATTRQS ATNQRTDTVG EEIYNDGEES 540 LADEQGRGTD DDETPDVVDM TSAYFNYHSF MDKTSRTKWS KHDTERFYEA VRQFGTDFCM 600 IQQLFPGRTR HQIKLKFKNE ERHHPFRLSD AITNRAKDHS QFLSLIGQLQ EAANKAKHES 660 NEDELTEISG DEELGELAPE TNEEEVAKPG EVEDTKMEEF VGEIHSPLKA DESDDDDPHR 720 WDEYKFDY

Sequence ? help Back to Top

Protein Sequence Length: 728 aa Download sequence

MDPFDEILSD PGFTSRTGGR FQPKIKPRPK KQTLAPQLST VSQDKKGTTS DAKSCHDGRG  60
NTKSIKSSSQ LPVIEENKES EDDLLLATVD CTLLDLDSCG GILPSGSTID GPVGVENLTD  120
DSKNSGILNY SHSSASRAHE ATVLGQSGLG SIQPEDGHSN DGKIAGQNTD VFYELEWLDD  180
FHSQPKNEAD PSSLKQATIS NEDGDLDKQR LEVEECGAGA NITRDTISSG TTTPSEQPAC  240
KYIPKPKMRI AGDSCTQSSQ PEISNTLPPS PQVISCDTRC MHEASIGTHS DGVLNDSSIN  300
FDDYSPVNQH IEAPVNVESL AYDSYGDILV DDFNSDDQDE MLREEGGKNG EEDPSSRSNM  360
SQQQEMFPPV GEEIEHSKTS RKLRQQVSHQ LDDPEDGVDD FPSERFSNCD IHGDGYKKNE  420
TSKGRRGTKT KTKSLKPSSD NEKPTRKRKE ANKAVPDLQA EKRPKKFSHS TRRNRRQVNK  480
VLLETPEDEI DFQKISFRDL IIYHEHKEKL EKKEATTRQS ATNQRTDTVG EEIYNDGEES  540
LADEQGRGTD DDETPDVVDM TSAYFNYHSF MDKTSRTKWS KHDTERFYEA VRQFGTDFCM  600
IQQLFPGRTR HQIKLKFKNE ERHHPFRLSD AITNRAKDHS QFLSLIGQLQ EAANKAKHES  660
NEDELTEISG DEELGELAPE TNEEEVAKPG EVEDTKMEEF VGEIHSPLKA DESDDDDPHR  720
WDEYKFDY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	1e-36	MYB_related family protein