PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_023549842.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 728aa MW: 81553.8 Da PI: 4.5638 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.9 | 7.4e-11 | 576 | 619 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r +W++ + e++++av+q+G++ + I + ++ gRt+ q+k+++ + XP_023549842.1 576 RTKWSKHDTERFYEAVRQFGTD-FCMIQQLFP-GRTRHQIKLKFKN 619 789*******************.*********.**********987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 728 aa Download sequence |
MDPFDEILSD PGFTSRTGGR FQPKIKPRPK KQTLAPQLST VSQDKKGTTS DAKSCHDGRG 60 NTKSIKSSSQ LPVIEENKES EDDLLLATVD CTLLDLDSCG GILPSGSTID GPVGVENLTD 120 DSKNSGILNY SHSSASRAHE ATVLGQSGLG SIQPEDGHSN DGKIAGQNTD VFYELEWLDD 180 FHSQPKNEAD PSSLKQATIS NEDGDLDKQR LEVEECGAGA NITRDTISSG TTTPSEQPAC 240 KYIPKPKMRI AGDSCTQSSQ PEISNTLPPS PQVISCDTRC MHEASIGTHS DGVLNDSSIN 300 FDDYSPVNQH IEAPVNVESL AYDSYGDILV DDFNSDDQDE MLREEGGKNG EEDPSSRSNM 360 SQQQEMFPPV GEEIEHSKTS RKLRQQVSHQ LDDPEDGVDD FPSERFSNCD IHGDGYKKNE 420 TSKGRRGTKT KTKSLKPSSD NEKPTRKRKE ANKAVPDLQA EKRPKKFSHS TRRNRRQVNK 480 VLLETPEDEI DFQKISFRDL IIYHEHKEKL EKKEATTRQS ATNQRTDTVG EEIYNDGEES 540 LADEQGRGTD DDETPDVVDM TSAYFNYHSF MDKTSRTKWS KHDTERFYEA VRQFGTDFCM 600 IQQLFPGRTR HQIKLKFKNE ERHHPFRLSD AITNRAKDHS QFLSLIGQLQ EAANKAKHES 660 NEDELTEISG DEELGELAPE TNEEEVAKPG EVEDTKMEEF VGEIHSPLKA DESDDDDPHR 720 WDEYKFDY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G39160.1 | 1e-36 | MYB_related family protein |