PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023549807.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MIKC_MADS

Protein Properties

Length: 211aa MW: 24260.1 Da PI: 9.7014

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023549807.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.5	2.7e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtfskRrngilKKA+ELSvLCdaev+viifs++g+lye+ss XP_023549807.1 9 KRIENSTSRQVTFSKRRNGILKKAYELSVLCDAEVSVIIFSQKGRLYEFSS 59 79***********************************************96 PP
2	K-box	58.6	2.7e-20	82	171	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++e +++++qe++ k+ie+L+++q++l+G +L+s+s++e +++e+qL sl++iR++K l++eq ++l +k k l eenk+L++k XP_023549807.1 82 QSEGYMQQMKQEVEMTAKKIEELEKSQKKLMGRGLDSCSFEEVREIEKQLILSLTRIRERKALLFKEQKDKLIEKGKLLIEENKKLSAKC 171 677789********************************************************************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MVRGKVEMKR IENSTSRQVT FSKRRNGILK KAYELSVLCD AEVSVIIFSQ KGRLYEFSSS 60 IMQKTIERYR KYGKGGETNT FQSEGYMQQM KQEVEMTAKK IEELEKSQKK LMGRGLDSCS 120 FEEVREIEKQ LILSLTRIRE RKALLFKEQK DKLIEKGKLL IEENKKLSAK CGTKPWEQEG 180 IEAEGGIMSL CSQSRQGSDI QTELFIGLSC S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62165.3	2e-77	MIKC_MADS family protein