PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023549448.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 492aa MW: 54760.2 Da PI: 6.9949

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023549448.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.3	3.2e-09	305	352	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_023549448.1 305 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 352 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence
MENEFFLNAT GIPQSLMRFD SNPSMPTWHH QFSSSAMDVP PQPHLPDLTH CSSSHQSPPD 60 CFLNPVPDQS FQFDSALSSM VSSPAASNSN LTNESFVIRQ LIGKLGGNSE RRILELNSTA 120 ALTPSSSVAE FTSDPGLAER AARFSCFGSR SFNDRQLTNE FGNYRSHLPT ATEKLSRVSS 180 SPSIKALGSE TNLLEQHKNN SSSHEDESSL SNPDKAIPNP RKRKAITKAK LKEPIVEAPG 240 KEIPKKLKAV EPKENEKGNM KTEEDSQKID EKTAEEKQTK ENSKPPEPPK DYIHVRARRG 300 QATDSHSLAE RVRREKISER MKLLQDLVPG CNKVTGKALM LDEIINYVQS LQHQVEFLSM 360 KLASVNTTTT RVDFNVDSLI SKQMYESGTS LRHPQISPIE SSGSRFYGHT NPSLPTTSHC 420 SVDPLDSVLR QNLPIQHPPP LNSSFPQNHP SQYRSFGEDE LQSMVQMGFI QNQTQNFNIG 480 NHAGSEQMKI EL

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence

MENEFFLNAT GIPQSLMRFD SNPSMPTWHH QFSSSAMDVP PQPHLPDLTH CSSSHQSPPD  60
CFLNPVPDQS FQFDSALSSM VSSPAASNSN LTNESFVIRQ LIGKLGGNSE RRILELNSTA  120
ALTPSSSVAE FTSDPGLAER AARFSCFGSR SFNDRQLTNE FGNYRSHLPT ATEKLSRVSS  180
SPSIKALGSE TNLLEQHKNN SSSHEDESSL SNPDKAIPNP RKRKAITKAK LKEPIVEAPG  240
KEIPKKLKAV EPKENEKGNM KTEEDSQKID EKTAEEKQTK ENSKPPEPPK DYIHVRARRG  300
QATDSHSLAE RVRREKISER MKLLQDLVPG CNKVTGKALM LDEIINYVQS LQHQVEFLSM  360
KLASVNTTTT RVDFNVDSLI SKQMYESGTS LRHPQISPIE SSGSRFYGHT NPSLPTTSHC  420
SVDPLDSVLR QNLPIQHPPP LNSSFPQNHP SQYRSFGEDE LQSMVQMGFI QNQTQNFNIG  480
NHAGSEQMKI EL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	221	248	RKRKAITKAKLKEPIVEAPGKEIPKKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	2e-88	bHLH family protein