PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023549267.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

FAR1

Protein Properties

Length: 667aa MW: 77272.1 Da PI: 8.5221

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023549267.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.5	3.9e-22	58	141	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+ trtgC a+++++++++++w+v +++leHnH l XP_023549267.1 58 NYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKDTRTGCPAMIRMRLMDSQRWRVLEVSLEHNHLL 141 69***************************************9988.....99*******************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence
MEEPSLTSDQ SPQVEHSGIH KDGNEDAPIS ELDGHHGRKE FVAPAVGMEF ESYEDAYNYY 60 NCYAKEVGFR VRVKNSWFKR NSREKYGAVL CCSSQGFKRI KDVNRLRKDT RTGCPAMIRM 120 RLMDSQRWRV LEVSLEHNHL LGSKIYKSMK KMNGGAKRKI QLSSDAEDRT INLYRALVID 180 AGGSVATDTS AKKVRIIPDN RNHLNLKKGD SQAIYNYLCR MQLTNPNFYY SMDLNDDGRL 240 RNMIWVDARS RAACAFFGDV ICFDNSYLSN KYEIPLVAFV GINHHGQSVL LGCGLLAGET 300 TESYTWLFRA WLSCMSGRSP QTIITDRCRH LQAAITEVLP KSQHRFGLSY IMKKVPEKLG 360 GLRNYDAIKK AFNKAVYETL KVIEFDSAWG FMIQRFGIGD HEWLRSLFED RGQWAPVYLK 420 DTFFAGMSAM GRGEKLNPFF DKYVHKQTPL KEFLDKYELA LQKKHKEEAS ADIESRNSSP 480 TLKTRCSFEL QLSKVFTREI FTKFQFEVEE MYSCFSTTQF QVDGPLVIFL VKERIVSEGN 540 RREIREYEVL YNRTAGEVRC ICSCFNFYGY LCRHALCVLN FNGVEEIPSR YVLSRWKRDY 600 KRLHVPDHET DIVDGSERVR WFNQLYKSAL QVVEEGVISL DHYKAALQAF EESISRVHET 660 VREEKHE

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence

MEEPSLTSDQ SPQVEHSGIH KDGNEDAPIS ELDGHHGRKE FVAPAVGMEF ESYEDAYNYY  60
NCYAKEVGFR VRVKNSWFKR NSREKYGAVL CCSSQGFKRI KDVNRLRKDT RTGCPAMIRM  120
RLMDSQRWRV LEVSLEHNHL LGSKIYKSMK KMNGGAKRKI QLSSDAEDRT INLYRALVID  180
AGGSVATDTS AKKVRIIPDN RNHLNLKKGD SQAIYNYLCR MQLTNPNFYY SMDLNDDGRL  240
RNMIWVDARS RAACAFFGDV ICFDNSYLSN KYEIPLVAFV GINHHGQSVL LGCGLLAGET  300
TESYTWLFRA WLSCMSGRSP QTIITDRCRH LQAAITEVLP KSQHRFGLSY IMKKVPEKLG  360
GLRNYDAIKK AFNKAVYETL KVIEFDSAWG FMIQRFGIGD HEWLRSLFED RGQWAPVYLK  420
DTFFAGMSAM GRGEKLNPFF DKYVHKQTPL KEFLDKYELA LQKKHKEEAS ADIESRNSSP  480
TLKTRCSFEL QLSKVFTREI FTKFQFEVEE MYSCFSTTQF QVDGPLVIFL VKERIVSEGN  540
RREIREYEVL YNRTAGEVRC ICSCFNFYGY LCRHALCVLN FNGVEEIPSR YVLSRWKRDY  600
KRLHVPDHET DIVDGSERVR WFNQLYKSAL QVVEEGVISL DHYKAALQAF EESISRVHET  660
VREEKHE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1 family protein