PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023548998.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family B3
Protein Properties Length: 331aa    MW: 37739.2 Da    PI: 6.6821
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023548998.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.31.1e-3180184199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+kv tpsdv+k++rlv+pk++ae++    +  + ++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  XP_023548998.1  80 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSATNDKGLILNFEDPNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGvGDsAR 174
                     89*************************999444457789************************************************66588788 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l++ ++r+
  XP_023548998.1 175 DRLFIDWRRR 184
                     8999999987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MEFLTKSNAY SEEEEEEEEE EEDDEIRGVA CDFFPNSRTQ NQEWVQHPPI NQALDHHPLM  60
DLSLRMETNG FGVVEREHMF DKVVTPSDVG KLNRLVIPKQ HAEKYFPLDS ATNDKGLILN  120
FEDPNGKPWR FRYSYWNSSQ SYVMTKGWSR FVKDKKLDAG DVVSFHRGVG DSARDRLFID  180
WRRRPNTLTP PPPPHHHHFS NPPLLFLPQS LRWATARHLP PPAQPPPHHR LYSNYAFEIP  240
NLGMPHNNNS SMYYFRPTSM SSSPSEIVVH SEGSSMGIKK PTSGAAKRLR LFGVNMECAA  300
EDGGGGGEDL SNGGVSRRGK QPFSLKNWDL V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.16e-66B3 family protein