PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023548949.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 258aa    MW: 29099.6 Da    PI: 6.6737
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023548949.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l + ++ +G  +W++ ++  g+ R++k+c++rw +yl
   XP_023548949.1 14 KGPWSPEEDRILTNFIQNHGHSNWRALPKQAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding53.74.8e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l
   XP_023548949.1  67 RGNFTKEEEDAIIKLHELLGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MVRAPCCEKM GLKKGPWSPE EDRILTNFIQ NHGHSNWRAL PKQAGLLRCG KSCRLRWTNY  60
LKPDIKRGNF TKEEEDAIIK LHELLGNRWS AIAAKLPGRT DNEIKNVWHT HLKKRVEKNI  120
KTKAPTSENK RKKQIKPKTS SESSSSIVIN ITNQTQIANY SSITSPSSQQ SSSCEISSSL  180
TDASMAENEY YSYPAEGTEA MLEAPPPIDE SFWSEVAEDS TNSNSMDKSY GESVVDDDME  240
FWYNVFVQAG GISELPEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113133KKRVEKNIKTKAPTSENKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.14e-85MYB family protein