PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023548776.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 649aa MW: 73259.3 Da PI: 5.7438

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023548776.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.3	2.1e-06	463	496	17	55
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 N++f L+++lP++ +K++iL +++Y+k+L+ XP_023548776.1 463 NEKFMALKSMLPSL-----NEINKVSILNDTIKYLKMLE 496 99*********8.....58*************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 649 aa Download sequence
MANGTEICDS EPGFLRKQLA VAVKSIQWSY AIFWSPSIRQ HGVLEWCDGY YNGDIKTRKT 60 VQAEDVHVDI MGLHRSEQLR ELYKSLLDGE NEQRSKKPPA SLSPEDLSDA EWYYLVCMSF 120 FFNQGQGLPG RALADDRTIW LCNAQYAESS VFSRSLLAKS ASIQTVVCFP YLGGVIELGV 180 TEQVSEDPSL LQHVKDFLLK FSKPICSKKS SSSAYKDDNG KEPMVAKSDN EIVEVLAMEN 240 VHGLTAAKFD RKAVNGIQRK NDEFGIDSLD RFSNGCERFH QMVDPLRLEG VEGGASCFRS 300 LQFLDDDFSY GFQDSMNPSD CISEALVNNP EKVSSKGTND LSLKELQNSN RTKSVSLDPR 360 TDEDLHYKRT IFTILGSSTQ LAGSPLLHSF SSRSSFMPWK KGMAEINTAP VQQKMLKKIL 420 FTVPLLSAGC SLNRLNDGER SILKQGNDDF CTKDVVHDKL RENEKFMALK SMLPSLNEIN 480 KVSILNDTIK YLKMLEARVQ ELETCMDSLY YEERFRRKYL DMVEQTSDNY DYDKIEGTLK 540 PSTNKRKACE MDETDLKLKN NIPKDGLKLD VKVTMNEQEV LVDMHCPYRE YILVDVMDTL 600 NDLQLDAHSV QSSDRNGVFS LTLKSKFRGM VAASVGMVKL ALLKVANKS

Sequence ? help Back to Top

Protein Sequence Length: 649 aa Download sequence

MANGTEICDS EPGFLRKQLA VAVKSIQWSY AIFWSPSIRQ HGVLEWCDGY YNGDIKTRKT  60
VQAEDVHVDI MGLHRSEQLR ELYKSLLDGE NEQRSKKPPA SLSPEDLSDA EWYYLVCMSF  120
FFNQGQGLPG RALADDRTIW LCNAQYAESS VFSRSLLAKS ASIQTVVCFP YLGGVIELGV  180
TEQVSEDPSL LQHVKDFLLK FSKPICSKKS SSSAYKDDNG KEPMVAKSDN EIVEVLAMEN  240
VHGLTAAKFD RKAVNGIQRK NDEFGIDSLD RFSNGCERFH QMVDPLRLEG VEGGASCFRS  300
LQFLDDDFSY GFQDSMNPSD CISEALVNNP EKVSSKGTND LSLKELQNSN RTKSVSLDPR  360
TDEDLHYKRT IFTILGSSTQ LAGSPLLHSF SSRSSFMPWK KGMAEINTAP VQQKMLKKIL  420
FTVPLLSAGC SLNRLNDGER SILKQGNDDF CTKDVVHDKL RENEKFMALK SMLPSLNEIN  480
KVSILNDTIK YLKMLEARVQ ELETCMDSLY YEERFRRKYL DMVEQTSDNY DYDKIEGTLK  540
PSTNKRKACE MDETDLKLKN NIPKDGLKLD VKVTMNEQEV LVDMHCPYRE YILVDVMDTL  600
NDLQLDAHSV QSSDRNGVFS LTLKSKFRGM VAASVGMVKL ALLKVANKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	1e-146	bHLH family protein