PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023547951.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 404aa MW: 45682.4 Da PI: 6.9009

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023547951.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.5	3.7e-06	3	26	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC++f+ G C G+ C F+H+ XP_023547951.1 3 KRVLCKYFSH-GACLKGEYCEFSHD 26 99**9999.***********5 PP
2	zf-CCCH	25.1	3.1e-08	34	54	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C ++++ G C +G+rC++ H+ XP_023547951.1 34 VCTYYQK-GRCAFGSRCRYDHV 54 6****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MSKRVLCKYF SHGACLKGEY CEFSHDWSAP PSNVCTYYQK GRCAFGSRCR YDHVKVSHAE 60 SSASSNSQQP HVSESVSIAH PLLSRPLSPL PGSTSEFAGS KISCPPSQVQ IVWSGESEHP 120 DGLDDWRNGE TRIVGPADIP ICSFAAAGSD CPRGQNCPHI HGDLCPTCGK QCLHPFRTDE 180 REEHIKACEK KQKHLESLKR SQDIECSVCL ERVLSKTEIA ERKFGLLSEC DHPFCISCIR 240 NWRNTSSTSG MDVNSALRAC PICRKLSYFV IPSVIWYSSK EEKQEIVDSY KSRLRSIDCK 300 HFNFGNGNCP FGSSCFYKHL VKPGSYSWKY HRPPPRRPRS QRTPNRSNIV DMDAFFDMFE 360 DLEDLDFSAE DLDFEDLTPL EMAFVLMQLG REANSSSDEE NIRF

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MSKRVLCKYF SHGACLKGEY CEFSHDWSAP PSNVCTYYQK GRCAFGSRCR YDHVKVSHAE  60
SSASSNSQQP HVSESVSIAH PLLSRPLSPL PGSTSEFAGS KISCPPSQVQ IVWSGESEHP  120
DGLDDWRNGE TRIVGPADIP ICSFAAAGSD CPRGQNCPHI HGDLCPTCGK QCLHPFRTDE  180
REEHIKACEK KQKHLESLKR SQDIECSVCL ERVLSKTEIA ERKFGLLSEC DHPFCISCIR  240
NWRNTSSTSG MDVNSALRAC PICRKLSYFV IPSVIWYSSK EEKQEIVDSY KSRLRSIDCK  300
HFNFGNGNCP FGSSCFYKHL VKPGSYSWKY HRPPPRRPRS QRTPNRSNIV DMDAFFDMFE  360
DLEDLDFSAE DLDFEDLTPL EMAFVLMQLG REANSSSDEE NIRF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	196	201	ESLKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-135	C3H family protein