PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023547570.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 479aa MW: 51304.5 Da PI: 6.3462

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023547570.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47.9	2.3e-15	294	339	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq XP_023547570.1 294 HNQSERKRRDKINQRMKTLQKLVPNS-----NKTDKASMLDEVIEYLKQLQ 339 9**********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence
MSQCVPNWDI SDPPPSAAAV AADRLPYHSS SAADDVVPMF EYEVAELTWE NGQLAMHGLG 60 LPKVTGKSHH GGGGGGGGGG DGSKYTWENK PARASGTLEY LVNQGTRHGK IGFDVNTDDG 120 SGGANDLVPW FSDHHKQTLQ TPAASAATTM DAMVPCDGDK SAAGGAGKAT VESSDTPAVG 180 LEDEDGRVTK RGRVVARAVH AEREWSVCQN QISVSGSDAT LNTHDRNFAA TATTSHGSLD 240 NTSSGKRYVN TTTDDHDSVC HSTYQVEEED EGDRKKENPK SSISTKRSRA AAIHNQSERK 300 RRDKINQRMK TLQKLVPNSN KTDKASMLDE VIEYLKQLQA QIQMMSRINM PMMLPMAAMQ 360 QQLPMASLMA TPMGLGMGMA GMGMGMALGI DHLNMMATRS GLAAGMSPML HPTAFMPMAA 420 WDGGTYDQRQ PSPSTMIADP ISAFLACQSQ PMTMEAYSRI ATMFQQMNQQ QPTVGGSKN

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence

MSQCVPNWDI SDPPPSAAAV AADRLPYHSS SAADDVVPMF EYEVAELTWE NGQLAMHGLG  60
LPKVTGKSHH GGGGGGGGGG DGSKYTWENK PARASGTLEY LVNQGTRHGK IGFDVNTDDG  120
SGGANDLVPW FSDHHKQTLQ TPAASAATTM DAMVPCDGDK SAAGGAGKAT VESSDTPAVG  180
LEDEDGRVTK RGRVVARAVH AEREWSVCQN QISVSGSDAT LNTHDRNFAA TATTSHGSLD  240
NTSSGKRYVN TTTDDHDSVC HSTYQVEEED EGDRKKENPK SSISTKRSRA AAIHNQSERK  300
RRDKINQRMK TLQKLVPNSN KTDKASMLDE VIEYLKQLQA QIQMMSRINM PMMLPMAAMQ  360
QQLPMASLMA TPMGLGMGMA GMGMGMALGI DHLNMMATRS GLAAGMSPML HPTAFMPMAA  420
WDGGTYDQRQ PSPSTMIADP ISAFLACQSQ PMTMEAYSRI ATMFQQMNQQ QPTVGGSKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	298	303	ERKRRD
2	299	304	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	1e-92	bHLH family protein