PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023547252.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

NAC

Protein Properties

Length: 439aa MW: 48855.3 Da PI: 6.9968

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023547252.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	112	6.7e-35	48	196	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....... 77 lp+G++F+Ptd+el+ e+L++kve+k+ + +e+i+++d i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ XP_023547252.1 48 LPAGVKFDPTDQELI-EHLEAKVEAKNdikshplI--DEFIPTLDgedgICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqtecdi 138 799**********.99***9987775332..234555545556******.555666799**************86888888 PP NAM 78 ......tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l XP_023547252.1 139 qgggggGGETRWHKTGKTRPVMV-NGRQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 196 77776645778********.999*******5547999999*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence
MNMKSNLGSI TSSDLIDAKL EEHQKCGSKQ CPGCGHKLER SVQDWLGLPA GVKFDPTDQE 60 LIEHLEAKVE AKNDIKSHPL IDEFIPTLDG EDGICYTHPE KLPGVTRDGL SRHFFHRPSK 120 AYTTGTRKRR KIQTECDIQG GGGGGGETRW HKTGKTRPVM VNGRQKGCKK ILVLYTNFGK 180 NRKPEKTNWV MHQYHLGQHE EEREGELVVS KIFYQTQPRQ CNWSSSDKAA AAAAEVTGDN 240 VVLSKRENVS GSYSSSRQMA TRQRDDISPV GGGLCPPPHF AATYGGLDHI QPFKADHFSF 300 GPYRRTFDET GIGEAAPGEG IGDHRHHHCH HISVATTAFQ ITRPSNPIST IIYPSSLHHS 360 SIILDHDSYQ VSQNESFQQQ QQHHDKLGGR SASGLEELIM GCSSSNIKEE STMGNNSEEA 420 AEWMKFSPFW PEPDNPNHD

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence

MNMKSNLGSI TSSDLIDAKL EEHQKCGSKQ CPGCGHKLER SVQDWLGLPA GVKFDPTDQE  60
LIEHLEAKVE AKNDIKSHPL IDEFIPTLDG EDGICYTHPE KLPGVTRDGL SRHFFHRPSK  120
AYTTGTRKRR KIQTECDIQG GGGGGGETRW HKTGKTRPVM VNGRQKGCKK ILVLYTNFGK  180
NRKPEKTNWV MHQYHLGQHE EEREGELVVS KIFYQTQPRQ CNWSSSDKAA AAAAEVTGDN  240
VVLSKRENVS GSYSSSRQMA TRQRDDISPV GGGLCPPPHF AATYGGLDHI QPFKADHFSF  300
GPYRRTFDET GIGEAAPGEG IGDHRHHHCH HISVATTAFQ ITRPSNPIST IIYPSSLHHS  360
SIILDHDSYQ VSQNESFQQQ QQHHDKLGGR SASGLEELIM GCSSSNIKEE STMGNNSEEA  420
AEWMKFSPFW PEPDNPNHD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-140	NAC family protein