PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023546627.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

SBP

Protein Properties

Length: 462aa MW: 51935.2 Da PI: 8.582

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023546627.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.8	8.8e-40	172	248	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ d+s++k+y+r+h+vCe hsk+p+v++ g e+rfCqqCsrfh++sefD +krsCrrrL++hn+rrrk+q+ XP_023546627.1 172 CQVEGCNIDISNIKDYYRKHRVCESHSKSPKVIIGGFERRFCQQCSRFHSISEFDGKKRSCRRRLSNHNARRRKPQS 248 **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
MEWNARPPLQ WDWDNLTVLN PRYSEHGDVL HPTIFQTKHG INFGPSNSAG DDRTTGGPFF 60 KLGQTSPKIS KSVSTNSSSF EKSRTTKFTL EGFEPTLEDS CNKKEFVEAE VVSTYGTPET 120 STCSCEPMLS LKLGKQAYFE NASAVNLTKP SALMVESRAT RKRCQNTPSA HCQVEGCNID 180 ISNIKDYYRK HRVCESHSKS PKVIIGGFER RFCQQCSRFH SISEFDGKKR SCRRRLSNHN 240 ARRRKPQSKV VSLNPARLSS WDFENRQIDI FSDKLSLIYP TPNEKSAWES AFSSRHPQCG 300 KYVSKPEPTY GSIGQLNVSG DEMCYVHAMP YHDNTSKAVP FKGAATKILD PAQDLQRALS 360 LLSTDTKGPY EARLFAPDNP NRLVNPNYAN QPSISQSPMN LGIQTLPFAS VDSQSWGNGH 420 HHPIELQMQI HHPNIEGGNN LFQDFQLFKT PCEIGMFSNQ IS

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

MEWNARPPLQ WDWDNLTVLN PRYSEHGDVL HPTIFQTKHG INFGPSNSAG DDRTTGGPFF  60
KLGQTSPKIS KSVSTNSSSF EKSRTTKFTL EGFEPTLEDS CNKKEFVEAE VVSTYGTPET  120
STCSCEPMLS LKLGKQAYFE NASAVNLTKP SALMVESRAT RKRCQNTPSA HCQVEGCNID  180
ISNIKDYYRK HRVCESHSKS PKVIIGGFER RFCQQCSRFH SISEFDGKKR SCRRRLSNHN  240
ARRRKPQSKV VSLNPARLSS WDFENRQIDI FSDKLSLIYP TPNEKSAWES AFSSRHPQCG  300
KYVSKPEPTY GSIGQLNVSG DEMCYVHAMP YHDNTSKAVP FKGAATKILD PAQDLQRALS  360
LLSTDTKGPY EARLFAPDNP NRLVNPNYAN QPSISQSPMN LGIQTLPFAS VDSQSWGNGH  420
HHPIELQMQI HHPNIEGGNN LFQDFQLFKT PCEIGMFSNQ IS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	228	245	KKRSCRRRLSNHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	6e-45	SBP family protein