PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023545967.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 370aa MW: 42759.1 Da PI: 6.5824

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023545967.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	88.1	1e-27	69	150	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rrem+ ++++k++k+lWe++s+kmrergf rsp++C++kw+nl k++kk k+++++ s +++y++++e XP_023545967.1 69 WVQDETRSLIALRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKEIE 150 ******************************************************************84...556899*997 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MYLSDKPRPI DIYKEEASRD MMIEVASNAD HHIQPHQPQP THQQHQMMLG DSSGEDHEVK 60 APKKRAETWV QDETRSLIAL RREMDGLFNT SKSNKHLWEQ ISAKMRERGF DRSPTMCTDK 120 WRNLLKEFKK AKHQDRGSGS AKMSYYKEIE EILKERSKST QYKSPTPPKI DSYIQFSDKG 180 GRPSLNLERQ LDHDGHPLAI TAADAVAATG IPPWNWREAP GNDGESQAFG GRVISVKWGD 240 YTRRIGIDGT SEAIKEAIKS AFRLRTKRAF WLEDEDQVVR SLDRDMPLGN YTLHLDEVEL 300 LISGLAVKIC LYDESDHLPV HTEEKIFYIE EDYRDFLTRR GWTCLREFDG YRNIDTMDDL 360 RPGAIYRGIS

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MYLSDKPRPI DIYKEEASRD MMIEVASNAD HHIQPHQPQP THQQHQMMLG DSSGEDHEVK  60
APKKRAETWV QDETRSLIAL RREMDGLFNT SKSNKHLWEQ ISAKMRERGF DRSPTMCTDK  120
WRNLLKEFKK AKHQDRGSGS AKMSYYKEIE EILKERSKST QYKSPTPPKI DSYIQFSDKG  180
GRPSLNLERQ LDHDGHPLAI TAADAVAATG IPPWNWREAP GNDGESQAFG GRVISVKWGD  240
YTRRIGIDGT SEAIKEAIKS AFRLRTKRAF WLEDEDQVVR SLDRDMPLGN YTLHLDEVEL  300
LISGLAVKIC LYDESDHLPV HTEEKIFYIE EDYRDFLTRR GWTCLREFDG YRNIDTMDDL  360
RPGAIYRGIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-180	Trihelix family protein