PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023544876.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

TALE

Protein Properties

Length: 352aa MW: 39698.6 Da PI: 6.7869

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023544876.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.4	1.4e-09	278	312	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ XP_023544876.1 278 KWPYPSESQKVALAESTGLDQKQINNWFINQRKRH 312 569*****************************885 PP
2	ELK	37.6	4.6e-13	232	253	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYs yLgsLkqEF+ XP_023544876.1 232 ELKGQLLRKYSRYLGSLKQEFM 253 9********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MDGPSGSSSG GGMMNFVDQN SHNAFGSMMM MMPLMSTSHQ QQHHHQGDAC SSFLPPPPPP 60 PPPPPNYTNN NTSNSISYFL DETNNNINEG SNGNSSCELK AKIMGHPHYH RLLVAYVNCR 120 KVGAPPDVVA RLEQACASAA TMSGTSCIGQ DPGLDQFMEA YCEMLTKYEH ELSKPFRDAM 180 LFLQRIECQF KALSISSSSD AGCGEAFDRN GSSEEEVDKN GQSIDPWAED HELKGQLLRK 240 YSRYLGSLKQ EFMKKRKKGK LPKEARQQLL DWWSRHYKWP YPSESQKVAL AESTGLDQKQ 300 INNWFINQRK RHWKPSEDMQ FVVMDAAHHH PQYYMDSVLG NPFPFDISPT LL

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MDGPSGSSSG GGMMNFVDQN SHNAFGSMMM MMPLMSTSHQ QQHHHQGDAC SSFLPPPPPP  60
PPPPPNYTNN NTSNSISYFL DETNNNINEG SNGNSSCELK AKIMGHPHYH RLLVAYVNCR  120
KVGAPPDVVA RLEQACASAA TMSGTSCIGQ DPGLDQFMEA YCEMLTKYEH ELSKPFRDAM  180
LFLQRIECQF KALSISSSSD AGCGEAFDRN GSSEEEVDKN GQSIDPWAED HELKGQLLRK  240
YSRYLGSLKQ EFMKKRKKGK LPKEARQQLL DWWSRHYKWP YPSESQKVAL AESTGLDQKQ  300
INNWFINQRK RHWKPSEDMQ FVVMDAAHHH PQYYMDSVLG NPFPFDISPT LL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	248	257	LKQEFMKKRK
2	254	258	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-130	TALE family protein