PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_023544862.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 646aa MW: 73890.7 Da PI: 8.228 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.5 | 2.6e-07 | 461 | 500 | 3 | 39 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkq 39 +W+++E ell ++ +++++g +W+ I++++g++R+ ++ XP_023544862.1 461 PWSKDEIELLRKGMQKYPKGtsrRWEVISEYIGTKRSVEE 500 8********************************8898876 PP | |||||||
2 | Myb_DNA-binding | 26.3 | 1.7e-08 | 589 | 631 | 3 | 43 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 W++ + lv+a k ++++ +W+++a+ ++ g+t +qck + XP_023544862.1 589 DWSAVQERALVQALKTFPKEtsqRWERVAAAVP-GKTVNQCKKK 631 6********************************.********87 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 646 aa Download sequence |
MTVLANLRLL TYSEEIVDGQ PIYVSSNCLP IKAFKYEPAG HAFHNAALKL LGCEDEEVSD 60 DNEQTSDDAE QKYAPSFDSY SSKGKKKSGG STQQDHYALL GLSNLRYLAT EEQIRKSYRE 120 TALKYHPDKQ AALLLAEETE AAKQAKKDEI ETHFKLIQEA YEVLIDPVKR RIYDSTDEFD 180 DEVPTDCAPQ DFFKVFGPAF MRNGRWSVNQ SIPSLGDDKT PLKEVDDFYN FWYSFKSWRE 240 FPHTDEFDLE QAESRDHKRW MERQNAKLSE KARKEEYARI RTLVDNAYKR DPRIQRRKEE 300 EKAQKQRKKE AKFLAKKLQE EEAIRLAEEE KRRKEEEDRR AAEVAQQQKK VKEREKKLLR 360 KERTRLRSLS GPIVSQSLLD LSEEDVENLC SSLDIEQLRS ICDKMEGKTG MELAKVLKDA 420 QECSNSERKQ PEGKKTGHQN GFTSANAGTT LSSSLPKKER PWSKDEIELL RKGMQKYPKG 480 TSRRWEVISE YIGTKRSVEE ILKATKTILL QKPDSSKAFD SFLEKRKPAQ SIASPLSTRE 540 ELVGSSSQKP EDNPATNGNL DTSSSQSVNN QTPNDSSANG VSSSSDQDDW SAVQERALVQ 600 ALKTFPKETS QRWERVAAAV PGKTVNQCKK KITSMKESFR NKKNAA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G11450.1 | 0.0 | MYB family protein |