PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023544399.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MIKC_MADS

Protein Properties

Length: 282aa MW: 33202.5 Da PI: 6.8911

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023544399.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	83	1.9e-26	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRr+g++KK +ELSvLCda++ +i+fss+gkl+ y++ XP_023544399.1 10 RIENRTTRQVTFSKRRAGVFKKTHELSVLCDAQIGLIVFSSNGKLFQYCT 59 8***********************************************96 PP
2	K-box	45	4.6e-16	84	173	11	99
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk.ekelqeenkaLrkkle 99 ++ e+l++ l+ ++k ++ Lq ++ ++ ed ++ +l++L+ +e++L++sl ++R++K+ell +q+++l++k ek+l++en+++ + ++ XP_023544399.1 84 MNHPEELERRLRIMRKDTDDLQLSLQRYTAEDFSTFQLRDLHDIENRLQNSLDRVRARKSELLQQQVDNLRRKvEKMLEDENEQIYHLIK 173 5678999999************************************************************98857889999999877665 PP

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence
MGRGKIAIRR IENRTTRQVT FSKRRAGVFK KTHELSVLCD AQIGLIVFSS NGKLFQYCTQ 60 PACMDQIIRR YQIAVGNPIP EQNMNHPEEL ERRLRIMRKD TDDLQLSLQR YTAEDFSTFQ 120 LRDLHDIENR LQNSLDRVRA RKSELLQQQV DNLRRKVEKM LEDENEQIYH LIKEQQMAME 180 EQQVVAMMQK RRSDDVEDQQ AVNMDGEDGF GFDNSSNDIH PHLQLQLQHY HQHQHQHHHE 240 PSSVLQLAPL PSPPPPPPFL PYRLQPFQPN LQDINLHSST YE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23260.2	1e-46	MIKC_MADS family protein