PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023544379.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 464aa MW: 50221.2 Da PI: 6.7871

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023544379.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.7	4.8e-09	287	335	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + sk Ka +L + ++Y++sLq XP_023544379.1 287 NSHSLAERVRREKISERMKFLQELVPGC----SKVTGKAVMLDEIINYVQSLQ 335 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MDNSISCSHS MFSDMRFGET TLTSMPVAVV EPFSSTVWEQ AANSQNMGTS KASGCPVSLS 60 PDISWNLSHN MFKGGVYLPH GVLPQSLSQL PADSSFIERA ARLSCFSGDI VGHFNIHEPP 120 MSVSIPERWD EIPRNGLGLV SGIEGQSQRT NEHGADENGS PLKVDDRGKQ ATDGSSANES 180 DEAEFSGGDG PCAIEVTANQ VSAKGRKRKR TGQVMNNDSC SDQPNGPLQQ ATVSAKNDTQ 240 NQPKGDQNPS STANKAAGKH GKQASQPSDP PKEEYIHVRA RRGQATNSHS LAERVRREKI 300 SERMKFLQEL VPGCSKVTGK AVMLDEIINY VQSLQRQVEF LSMKLATVNP RMDINIDGLL 360 AKDILQSQAG PSLTYMPTGC PPPRVSHHRL IPSGFPAIGS SEMLRKMSSQ MNPRSNGFKE 420 PSQIKSVWDG ELQNIVQMSF GMSTTLNCLE LEGSDSPGNT KVAH

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MDNSISCSHS MFSDMRFGET TLTSMPVAVV EPFSSTVWEQ AANSQNMGTS KASGCPVSLS  60
PDISWNLSHN MFKGGVYLPH GVLPQSLSQL PADSSFIERA ARLSCFSGDI VGHFNIHEPP  120
MSVSIPERWD EIPRNGLGLV SGIEGQSQRT NEHGADENGS PLKVDDRGKQ ATDGSSANES  180
DEAEFSGGDG PCAIEVTANQ VSAKGRKRKR TGQVMNNDSC SDQPNGPLQQ ATVSAKNDTQ  240
NQPKGDQNPS STANKAAGKH GKQASQPSDP PKEEYIHVRA RRGQATNSHS LAERVRREKI  300
SERMKFLQEL VPGCSKVTGK AVMLDEIINY VQSLQRQVEF LSMKLATVNP RMDINIDGLL  360
AKDILQSQAG PSLTYMPTGC PPPRVSHHRL IPSGFPAIGS SEMLRKMSSQ MNPRSNGFKE  420
PSQIKSVWDG ELQNIVQMSF GMSTTLNCLE LEGSDSPGNT KVAH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.1	3e-90	bHLH family protein