PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023544271.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 25713.3 Da    PI: 8.3198
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023544271.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.53.5e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +i+n + rqvtfskRr g++KKA+ELSvLCda+va+i+fs tgkl+e+ss
  XP_023544271.1 10 KIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIVFSATGKLFEFSS 59
                    69**********************************************96 PP
2K-box51.54.4e-18911701897
           K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     + ++++L+kei +  +++R++ Ge+L++L+++eLqqLe+ Le +l+++ +kK e ++++i++lq+k  el een++L++ 
  XP_023544271.1  91 NSNYTRLNKEIAEKTQQLRQMRGEELQTLNIEELQQLEKSLECGLSRVMEKKGERIMTEISDLQRKSAELMEENRRLKQA 170
                     56799*******9999*************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MAKERIQIRK IDNATARQVT FSKRRRGLFK KAKELSVLCD ADVALIVFSA TGKLFEFSSS  60
SMKGIIERHN LHSKNLQKLE QPSLELQLVE NSNYTRLNKE IAEKTQQLRQ MRGEELQTLN  120
IEELQQLEKS LECGLSRVME KKGERIMTEI SDLQRKSAEL MEENRRLKQA QKMNCVRNLG  180
VEPENLVVED GQSSNSVTEA CVSNSNGPPQ DLDSSDTSLK LGLPYSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-108MIKC_MADS family protein