PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023543981.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 277aa    MW: 31701.2 Da    PI: 4.6568
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023543981.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.37.3e-2064117356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t+eq++ Le  Fe+++++  e+++eLA+klgL+ rqV vWFqNrRa++k
  XP_023543981.1  64 KKRRLTQEQVHLLEISFESENKLEPERKTELANKLGLQPRQVAVWFQNRRARWK 117
                     5678*************************************************9 PP
2HD-ZIP_I/II128.33.3e-4163155193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrl++eqv+lLE sFe+e+kLeperK+ela++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+ +++ + + ke+e+L++e+++
  XP_023543981.1  63 EKKRRLTQEQVHLLEISFESENKLEPERKTELANKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSFRSSYDFVVKENERLKAEVAS 155
                     69**************************************************************************************99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    
MTDGLIFNRS PGHSNMLFFG SGDSVLRGPR FAMGMEETSK RRPFFSSPDD LFDDDYYDDQ  60
PPEKKRRLTQ EQVHLLEISF ESENKLEPER KTELANKLGL QPRQVAVWFQ NRRARWKTKQ  120
LERDYDLLKS SYDSFRSSYD FVVKENERLK AEVASLSEKL LAKEVVESSF QAKKSEPFLE  180
QQILVPVVQH SMKIEDHHSC RSNGSAVLDE DGPHLLDSGD SYLLSNDYNG CVLPVFGMNS  240
EEEDGSDDGQ GYFSAVYTTD DQQTNEMNKV KASVNIP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112120RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.19e-67HD-ZIP family protein