PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023543480.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB_related
Protein Properties Length: 242aa    MW: 27274.7 Da    PI: 4.9788
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023543480.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.4e-0831542448
                     HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48
                     W++Ia++++  Rt++++k++w+++l
   XP_023543480.1 31 WAAIASYLP-QRTDNDIKNYWNTHL 54
                     *********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MDQLPEARNQ ERQLYAPRGR NDHPFASFIG WAAIASYLPQ RTDNDIKNYW NTHLKKKLKS  60
ALDHSTTSEF FSKGFFNDSS TRTLDFDSSS ASVSVSASCF CPNRSSAASP SSSSSTYYSS  120
AENISRLLEG WMRSSPKTND NDNDNPFHFD EKQSHHGDSV VSNQCREVKT EQDGNRVASM  180
KEIESMVSLD NLGASCENDN KQNRSENNNN NNNNPPLSFL EKWLLDDTSV QVEEMMPLSP  240
MF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15460LKKKLKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.25e-25MYB_related family protein