PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023543388.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 741aa    MW: 81452.4 Da    PI: 6.186
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023543388.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.65.1e-1960115156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +r+  ++t+ q++e+e++F+++++p+ ++r +L+++lgL+  qVk+WFqN+R+++k
  XP_023543388.1  60 KRRYNRHTHLQIQEMEAFFKECPHPDDKQRMDLSRELGLEPLQVKFWFQNKRTQMK 115
                     6888999**********************************************998 PP
2START179.12.5e-562394592206
                     HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                     la + ++el ++a+a+ep+Wv          +n+ e+l+ f  ++v      +++ea+r+s++v+m++ +lv +l+d   qW++ +     +a+t
  XP_023543388.1 239 LAVSGMEELSRMAQAGEPLWVPADtksseVVLNEAEYLSCF-GGRVgpkplgFRTEASRVSAIVFMNHIKLVDILMDAT-QWSTLFCgivsRAST 331
                     5677799*************977655556788899999999.33448********************************.*****999999**** PP

                     EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                     +ev+s+g      gal+lm+ae+q++splvp R+ +fvRy++q+g+g+w+++dvS+d  ++ +    + R +++pSg+li++++ng+sk+twveh
  XP_023543388.1 332 VEVLSPGlpgnfnGALHLMSAEFQVPSPLVPtRENYFVRYCKQQGDGVWAVADVSLDTLRPCS----MPRTRRRPSGCLIQQLPNGYSKITWVEH 422
                     ***********************************************************9976....89999*********************** PP

                     EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     v+ ++  ++ ++r+l +sgla+gak+wvatl+rq e+
  XP_023543388.1 423 VEADETGVPTMYRPLFNSGLAFGAKRWVATLDRQSER 459
                     *********************************9886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    
MFDPDMFHTL HPHHHMFDMA FNTSENELEH VRDDDFESKS GPEITFEPPC ESEHQQRAKK  60
RRYNRHTHLQ IQEMEAFFKE CPHPDDKQRM DLSRELGLEP LQVKFWFQNK RTQMKAQQER  120
HENAILKAEN EKLRAENTRY REAFAHSTCP NCGSSATALG EMSFDDQHLR IENSRLRDEM  180
ERMSGYGLKS TKSVPSSYFH LPSNAPQTSG FVGEMYGACD FLRSISRPSE ADKPIIVELA  240
VSGMEELSRM AQAGEPLWVP ADTKSSEVVL NEAEYLSCFG GRVGPKPLGF RTEASRVSAI  300
VFMNHIKLVD ILMDATQWST LFCGIVSRAS TVEVLSPGLP GNFNGALHLM SAEFQVPSPL  360
VPTRENYFVR YCKQQGDGVW AVADVSLDTL RPCSMPRTRR RPSGCLIQQL PNGYSKITWV  420
EHVEADETGV PTMYRPLFNS GLAFGAKRWV ATLDRQSERF ATSIATSIST GDLRVISSIE  480
GRKSMLKLAE RMVTSFCAGV GASSVHAWTA LPIAAGDDVR VVTRKSTDEP GRPPGVVLSA  540
ATSFWIPVPP KAVFDFLRKE KSRSEWDILS NGGLVQEMAH IANGRHTGNC VSLLRVNSAN  600
SSQSNMLILQ ESCTDSTGSY VIYAPVDTVA MNVVLSGCDP DYVALLPSGF AILPDGPAGA  660
NGGEILELGS GFAILPDGPA GANGGEILEL GSGGSLITVA FQILVDSVPT ARLSIGSVAT  720
VNSLIKCTVE RIRAAVMREN P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein