PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023543235.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 384aa MW: 41027.7 Da PI: 5.3349

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023543235.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	7.1e-17	64	109	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v ++G ++W++Iar + gR++k+c++rw + XP_023543235.1 64 KGPWSPEEDAILSRLVSKFGARNWSLIARGIA-GRSGKSCRLRWCNQ 109 79****************************.*********985 PP
2	Myb_DNA-binding	54.7	2.4e-17	116	160	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd ++v a++ +G++ W++Iar + gRt++ +k++w++ XP_023543235.1 116 RKPFTDEEDRIIVAAHAVHGNK-WAAIARLLR-GRTDNAIKNHWNST 160 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MEDAAATEVG ASAAEGGGGG GGGGGVNECD AVASVADCGS GDEAVPMVGE GETTGGRGGK 60 DRVKGPWSPE EDAILSRLVS KFGARNWSLI ARGIAGRSGK SCRLRWCNQL DPSVKRKPFT 120 DEEDRIIVAA HAVHGNKWAA IARLLRGRTD NAIKNHWNST LRRRCTELER IKLESGNVVD 180 DASLEKTKGS SEETLSCGDV NSFKSFEGKD ASSREHMDDQ FEDKVPIASE GQFTHEVKEQ 240 PTLYRPVARV SAFSVYNPLD DQASLRAFIR PVPMQGPLIQ ASKPEVEASK LLEGVYGDRS 300 VPHQCGHGCC QSHNQGSPLD SLLGPEFVDF SEPPLSFPSF ELAAIATDIS NLAWLKSGLE 360 NGSVRAMGDS AGRLNGSQMQ MGRL

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MEDAAATEVG ASAAEGGGGG GGGGGVNECD AVASVADCGS GDEAVPMVGE GETTGGRGGK  60
DRVKGPWSPE EDAILSRLVS KFGARNWSLI ARGIAGRSGK SCRLRWCNQL DPSVKRKPFT  120
DEEDRIIVAA HAVHGNKWAA IARLLRGRTD NAIKNHWNST LRRRCTELER IKLESGNVVD  180
DASLEKTKGS SEETLSCGDV NSFKSFEGKD ASSREHMDDQ FEDKVPIASE GQFTHEVKEQ  240
PTLYRPVARV SAFSVYNPLD DQASLRAFIR PVPMQGPLIQ ASKPEVEASK LLEGVYGDRS  300
VPHQCGHGCC QSHNQGSPLD SLLGPEFVDF SEPPLSFPSF ELAAIATDIS NLAWLKSGLE  360
NGSVRAMGDS AGRLNGSQMQ MGRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-104	MYB family protein