PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023543052.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 266aa    MW: 29313.5 Da    PI: 7.9828
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023543052.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.7e-18117171256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq   Le+ F+ +++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  XP_023543052.1 117 RKKLRLTKEQSALLEDSFKLHSTLNPKQKQALARELNLRPRQVEVWFQNRRARTK 171
                     788899***********************************************98 PP
2HD-ZIP_I/II125.23.1e-40117206191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rl+keq++lLE+sF+ +++L+p++K++lareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en++L+ke +eL+ +l
  XP_023543052.1 117 RKKLRLTKEQSALLEDSFKLHSTLNPKQKQALARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRKLQKELQELK-AL 206
                     69*************************************************************************************9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MGFDDLSNTG LLLGLGLPLP SNPALLSHKP KKPVDLFSFP APESEPSLTL GLSTPETYPL  60
PAPETADSCR QPSPHSAISS FSGGRVKRER DVSGEDIEEE KACSRVSDED EDGSIARKKL  120
RLTKEQSALL EDSFKLHSTL NPKQKQALAR ELNLRPRQVE VWFQNRRART KLKQTEVDCE  180
FLKRCCETLT DENRKLQKEL QELKALKLAQ PLIMQMPAAT LTMCPSCERT GGGATAVNAD  240
GNSKSPFSMA LMPRFDKAFT KPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166174RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.15e-82HD-ZIP family protein