PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023542849.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 512aa MW: 55103.8 Da PI: 6.3974

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023542849.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.8	4.6e-09	327	375	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + sk Ka +L + ++Y++sLq XP_023542849.1 327 NSHSLAERARREKISERMKFLQELVPGC----SKVTGKAVMLDEIINYVQSLQ 375 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MDIGGGDEFR VVSSPQDCMS LDMAGCSSST AHVVESFSST IWEQAANSQN LGLLEEHNIC 60 RTSNDIAINK TIGCPVPLSS DNDKTLDISW SLSNNMLKGG GYLNAIPPSL SQLPADSSFI 120 ERAARFSWFS GGNFGDVIGH FDIPEPMDVF SRGMGVVMPE RQEDVPRRNG LGSVSRAGGR 180 FQGNTVNSEA SKPVSLHNAA HGSLLKLDDC CKHAVDGSAN ESDEAEVSGG DGSGEPCTLE 240 VAGKEVSAKG LAAKKRKRSG QKAELDQVNG PLQQTKDNTE SQLKGDQNPS STANKGTVKH 300 GKQASQPLDP PKEEYIHVRA RRGQATNSHS LAERARREKI SERMKFLQEL VPGCSKVTGK 360 AVMLDEIINY VQSLQRQVEF LSMKLATVNP RLDINIDELL EKDILQSRAG PSSTLGFSSH 420 MPVACPPPHV SHRGLIPVSF PAIASSETLR RSTISSQMMP RSGVFKEPTQ IKNMWDGELH 480 NIVQMSFGMS TAPNGLAAEG SDSPGNTKVE QH

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MDIGGGDEFR VVSSPQDCMS LDMAGCSSST AHVVESFSST IWEQAANSQN LGLLEEHNIC  60
RTSNDIAINK TIGCPVPLSS DNDKTLDISW SLSNNMLKGG GYLNAIPPSL SQLPADSSFI  120
ERAARFSWFS GGNFGDVIGH FDIPEPMDVF SRGMGVVMPE RQEDVPRRNG LGSVSRAGGR  180
FQGNTVNSEA SKPVSLHNAA HGSLLKLDDC CKHAVDGSAN ESDEAEVSGG DGSGEPCTLE  240
VAGKEVSAKG LAAKKRKRSG QKAELDQVNG PLQQTKDNTE SQLKGDQNPS STANKGTVKH  300
GKQASQPLDP PKEEYIHVRA RRGQATNSHS LAERARREKI SERMKFLQEL VPGCSKVTGK  360
AVMLDEIINY VQSLQRQVEF LSMKLATVNP RLDINIDELL EKDILQSRAG PSSTLGFSSH  420
MPVACPPPHV SHRGLIPVSF PAIASSETLR RSTISSQMMP RSGVFKEPTQ IKNMWDGELH  480
NIVQMSFGMS TAPNGLAAEG SDSPGNTKVE QH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	254	259	KKRKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-101	bHLH family protein