PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023542691.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

SBP

Protein Properties

Length: 405aa MW: 45042.5 Da PI: 7.452

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023542691.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.4	7.3e-42	94	170	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe hsk+p+v++ gl+qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ XP_023542691.1 94 CLVDGCNSDLSNCRDYHRRHKVCELHSKTPQVTIGGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQT 170 **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MESMSVNEVE RTNQFTSATL VWEHLLSLHS APSFPFIFTL FFPPISTFLG TSKFQSSWNT 60 VFAETEVEKM ASSTSGSSKR ARGANNAGSQ PVSCLVDGCN SDLSNCRDYH RRHKVCELHS 120 KTPQVTIGGL KQRFCQQCSR FHSLEEFDEG KRSCRKRLDG HNRRRRKPQT DLLPRSAGPF 180 SYHQGSHLLP YTSAQVYPST TVSSHGWSST GETAALHRDQ QLNFLEKQSL FVEQSDHSNN 240 YKTAQTLAFM HGGPTTTCQH LLRSMNTLSE NGGGGGGGER NKMIYDRFRI GVSESDCALS 300 LLSSPQAQTD HQPQQQPQPQ PQQAESGSSG HLDLSRIEQH QRSAAVSLLQ PLNNHHHHHH 360 HHSHNSYENS DSDNHGGALN FPGIFGIASE NAGNESPSTL PFHWE

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MESMSVNEVE RTNQFTSATL VWEHLLSLHS APSFPFIFTL FFPPISTFLG TSKFQSSWNT  60
VFAETEVEKM ASSTSGSSKR ARGANNAGSQ PVSCLVDGCN SDLSNCRDYH RRHKVCELHS  120
KTPQVTIGGL KQRFCQQCSR FHSLEEFDEG KRSCRKRLDG HNRRRRKPQT DLLPRSAGPF  180
SYHQGSHLLP YTSAQVYPST TVSSHGWSST GETAALHRDQ QLNFLEKQSL FVEQSDHSNN  240
YKTAQTLAFM HGGPTTTCQH LLRSMNTLSE NGGGGGGGER NKMIYDRFRI GVSESDCALS  300
LLSSPQAQTD HQPQQQPQPQ PQQAESGSSG HLDLSRIEQH QRSAAVSLLQ PLNNHHHHHH  360
HHSHNSYENS DSDNHGGALN FPGIFGIASE NAGNESPSTL PFHWE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	168	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	1e-52	SBP family protein