PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023542142.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 341aa MW: 37630.6 Da PI: 10.0738

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023542142.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58.1	2.3e-18	48	136	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v +L+ea+++++ +r+klk+++We+v++++ ++ f++spk qCk+k+e+++kry+ +++++ + + +ss++p++++l+ XP_023542142.1 48 EWSEGAVATLLEAYESKWVLRNRAKLKGHDWEDVARHVsSRANFTKSPKtqtQCKNKIESMKKRYRSETASAVDA-AAASSSWPLYHRLD 136 5***********************************756667776643339****************97.677779****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MDINPTPSPP ISDTNHHHPL PSAAATHGDP SPKKALSSTV GDRLKRDEWS EGAVATLLEA 60 YESKWVLRNR AKLKGHDWED VARHVSSRAN FTKSPKTQTQ CKNKIESMKK RYRSETASAV 120 DAAAASSSWP LYHRLDLLLR GNTQPPPLAT SVILVDAPPP PPPPPPPPPP PSPPPFTATL 180 NCLGSNGVDG IIPKEDGVDE TRVSDKEEKN KNNNNVVVET DSSTPAMPYS DNEKLRSKQQ 240 PKAKKTKKKK KKKTRMSDEL DEIASSIRWL AEVVTRSEQT RMEMMRDIER MRAEAEAKRG 300 EMDLKRTEII ANTQLEIAKL FAAGGKAADS SSRIGRPTSF N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	244	252	KKTKKKKKK
2	247	253	KKKKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	4e-83	Trihelix family protein