PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023542083.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MIKC_MADS

Protein Properties

Length: 261aa MW: 29257.9 Da PI: 9.313

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023542083.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	96.7	9.7e-31	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gkl+e+s XP_023542083.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLFEFS 58 79***********************************************8 PP
2	K-box	91.4	1.6e-30	93	174	19	100
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ +Lk+ +e +q++qR+llGedL++L+ keL+qLe+qLe+sl++iRs+K++ l++q+ elq+ke++l e+n++Lrkklee XP_023542083.1 93 DDYLNLKATVEFMQQSQRNLLGEDLGPLNAKELEQLEHQLETSLERIRSTKTRTLMDQLAELQRKEHMLVEDNRSLRKKLEE 174 6899***************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLFEFSGG 60 SSMTKTLEKY RRCSYDIRDG ARHLNNNGPQ SFDDYLNLKA TVEFMQQSQR NLLGEDLGPL 120 NAKELEQLEH QLETSLERIR STKTRTLMDQ LAELQRKEHM LVEDNRSLRK KLEESSAQVA 180 AASAAWGWEG GAGGHSMDYS SRIASQSDAF FYPITQPIPT LQIGYNSVGS VGLSNNNTHN 240 NNTNAGAPPQ NGNGFQLGWM L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15800.1	6e-78	MIKC_MADS family protein