PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023541847.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 562aa MW: 62151.3 Da PI: 9.5126

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023541847.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	54.3	2.3e-17	271	320	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f++Lre++P + ++K +Ka+ L ++eYI+ Lq XP_023541847.1 271 RSKHSVTEQRRRSKINDRFQKLREIIPRS----DQKRDKASFLLGVIEYIQFLQ 320 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence
MELPQPPRLR TEGRKPTHDF VSLYGHSTVH QQDHPSQSLQ GGYLKTHDFL RPLERVGKSC 60 AKEEKTISVS TAERAEPPLA TAAHNSPVEC VLPGGIGTYN ISHISYFNQR GVPKPEGSVF 120 SAAQASSTDK SDDNSRCSSL SGSGFTLWEE SAVKKGKTRK ENLGEKAGLR EPPAKVEQWT 180 VSTERPTQSS SSNHRNSFNS LASSQPPSGQ QNRSFGEMLK SVVKVSSEEE ELDDGKAFVI 240 KKESSPSTAY KGELRMNIGG KCSDQKANTP RSKHSVTEQR RRSKINDRFQ KLREIIPRSD 300 QKRDKASFLL GVIEYIQFLQ EKVRKYESSP PQGWYREPAK LIPVRNNCNP AQCYIDQSQV 360 AKRGPVFLFS GSNEKSMSHS PAFPRCSHNP VESEVSTSTA FREADHHPGT ANKTTSYQML 420 QPRNYTPVIS EGERTELQSQ MAYNADNKPC EMRSFNTDIA AGGNNLKEPE QSIEGGRISI 480 SSAYSQGLLK ILTQALQRSG VDMSQASIAV QIELGKRTNY RETVTRPAIV DDSSRPSERG 540 ILGTRGAAAE DLEQAISKKQ KT

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence

MELPQPPRLR TEGRKPTHDF VSLYGHSTVH QQDHPSQSLQ GGYLKTHDFL RPLERVGKSC  60
AKEEKTISVS TAERAEPPLA TAAHNSPVEC VLPGGIGTYN ISHISYFNQR GVPKPEGSVF  120
SAAQASSTDK SDDNSRCSSL SGSGFTLWEE SAVKKGKTRK ENLGEKAGLR EPPAKVEQWT  180
VSTERPTQSS SSNHRNSFNS LASSQPPSGQ QNRSFGEMLK SVVKVSSEEE ELDDGKAFVI  240
KKESSPSTAY KGELRMNIGG KCSDQKANTP RSKHSVTEQR RRSKINDRFQ KLREIIPRSD  300
QKRDKASFLL GVIEYIQFLQ EKVRKYESSP PQGWYREPAK LIPVRNNCNP AQCYIDQSQV  360
AKRGPVFLFS GSNEKSMSHS PAFPRCSHNP VESEVSTSTA FREADHHPGT ANKTTSYQML  420
QPRNYTPVIS EGERTELQSQ MAYNADNKPC EMRSFNTDIA AGGNNLKEPE QSIEGGRISI  480
SSAYSQGLLK ILTQALQRSG VDMSQASIAV QIELGKRTNY RETVTRPAIV DDSSRPSERG  540
ILGTRGAAAE DLEQAISKKQ KT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.2	9e-97	bHLH family protein