PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023540950.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 540aa MW: 59614.3 Da PI: 9.3654

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023540950.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.9	1.6e-15	59	105	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ede l +av+ + g++Wk+Ia+++ R++ qc +rwqk+l XP_023540950.1 59 KGGWTPQEDETLRNAVAAFKGKHWKKIAEYFH-DRSEVQCLHRWQKVL 105 688***************************.**********986 PP
2	Myb_DNA-binding	45.2	2.2e-14	111	157	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +e+d +++v ++G+ W++Ia+ ++ gR +kqc++rw+++l XP_023540950.1 111 KGPWAQEDDYTXIELVSKYGPTKWSLIAKSLP-GRIGKQCRERWHNHL 157 79****************************.***********97 PP
3	Myb_DNA-binding	52.8	9.4e-17	163	206	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ l +a++++G++ W+ Iar ++ gRt++ +k++w++ XP_023540950.1 163 KDAWTLEEELALMNAHRLHGNK-WAEIARVLP-GRTDNGIKNHWNS 206 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
MEEVKQEECC LENKQSTAAS SSSVSEGSGS ATAKSPGMCS PASTSPSRRR TSGPIRRAKG 60 GWTPQEDETL RNAVAAFKGK HWKKIAEYFH DRSEVQCLHR WQKVLNPDLV KGPWAQEDDY 120 TXIELVSKYG PTKWSLIAKS LPGRIGKQCR ERWHNHLNPD IKKDAWTLEE ELALMNAHRL 180 HGNKWAEIAR VLPGRTDNGI KNHWNSSLKK KLDFYLATGK LPPVAKNSSQ NGARDATRTP 240 PIKNFPPHSS KGSDSTAQTS SGNTDFYKLD GSSKDQIESS APPDEDVVAS TSGVLNESAD 300 SRHVKCWPGP SNITNLRVGK SGSARKNGTK TQGESDSEIS KLDEDKTTRT PLRFESPKYG 360 SLYYEPPKLE SRIPVDSELL SIYMHETNSS LITSPIGIFT PPCVKTRDLS IHSPESILRI 420 AARSFPSTPS ILRKRKTEAQ TCLPLKQAQD GETETVKDIS QESRPEETLN NSDSMLGSPN 480 GSLCDSPSID HSPSRSNSKA VNASPPYRLT SKRTAISKSV EKQLEFAFDK EKNNHTIKSA

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

MEEVKQEECC LENKQSTAAS SSSVSEGSGS ATAKSPGMCS PASTSPSRRR TSGPIRRAKG  60
GWTPQEDETL RNAVAAFKGK HWKKIAEYFH DRSEVQCLHR WQKVLNPDLV KGPWAQEDDY  120
TXIELVSKYG PTKWSLIAKS LPGRIGKQCR ERWHNHLNPD IKKDAWTLEE ELALMNAHRL  180
HGNKWAEIAR VLPGRTDNGI KNHWNSSLKK KLDFYLATGK LPPVAKNSSQ NGARDATRTP  240
PIKNFPPHSS KGSDSTAQTS SGNTDFYKLD GSSKDQIESS APPDEDVVAS TSGVLNESAD  300
SRHVKCWPGP SNITNLRVGK SGSARKNGTK TQGESDSEIS KLDEDKTTRT PLRFESPKYG  360
SLYYEPPKLE SRIPVDSELL SIYMHETNSS LITSPIGIFT PPCVKTRDLS IHSPESILRI  420
AARSFPSTPS ILRKRKTEAQ TCLPLKQAQD GETETVKDIS QESRPEETLN NSDSMLGSPN  480
GSLCDSPSID HSPSRSNSKA VNASPPYRLT SKRTAISKSV EKQLEFAFDK EKNNHTIKSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-141	MYB family protein