PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023540681.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Protein Properties

Length: 898aa MW: 99425 Da PI: 6.2752

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023540681.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.4	1.1e-17	317	416	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k l+ sd+++ grlv+pk +ae++ ++++e+ ++++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_023540681.1 317 FEKMLSASDAGRIGRLVVPKACAEAYfpPISQPEGLPIRIQDIKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGK 409 89************************555566778***********99899999999.*******************876.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 l +++++ XP_023540681.1 410 LIMGFRK 416 7777766 PP

Sequence ? help Back to Top
Protein Sequence Length: 898 aa Download sequence
MASRTCMNVS CGASSSTEWR KGWALRSGDF ATLCDKCGSA YEQSIFCDVF HLKDSGWREC 60 ASCGKNLHCG CIASKFLMEL HDSGGVNCIS CAKDLELHIT GTSEKLNGLG TPQVQNSGAL 120 QTLLVEDDNS DRIRLVQQGN KAEGNELRES LLLQSNDKTG SLVQMKHEEN ISLVKDVGYV 180 SSLEFNQATT NGLNETAKQE ICKADNGTKF TYDSLAFGCG NSNPLPGVSS DEKEDSMSSS 240 PLLLGSRSRH LIPKPARALF NVGLEPNASM VSQVRVARPP AEGRGRNQLL PRYWPRITDQ 300 ELQQISGASN STVVPLFEKM LSASDAGRIG RLVVPKACAE AYFPPISQPE GLPIRIQDIK 360 GKEWVFQFRF WPNNNSRMYV LEGVTPCIQS MQLQAGDTVT FSRMDPEGKL IMGFRKASSS 420 SIMQDTHPNA LSTAGGHSSE FFSSVFENLP MLSGHSSLLQ SLKGNMDPHL NLLPGYFNQP 480 GADMSWQKAE KHDDKSREGL LLSSMLAPER KRTRNIGSKS KRLLVDCQDA LELKLKWDEV 540 QDLLRPPPTV KPSKFVIEDH EFEEYEEPPV FGKRSIFLVR SNRGQEQWAQ CDDCSKWRKL 600 PVDVLLPSKW TCVENIWDQS MSSCSTPEEL TTRELEHILR LNKEFKRQRT LAFSRPIQDH 660 ESSGLDALAN AATLGDNVSD PGTASVATTT RHPRHRPGCS CIVCIQPPSG KGKHKPTCTC 720 NVCMTVKRRF KTLMMRKKKR QSEREAEIAQ KNQLKWGSRD ETELDNTSRH VSLNLGPSEN 780 EAQLTNESRS QSNLVETGKD QLDLNCHPDQ ENEVQGVSNR VSMMSLVQIA SLPLETYLKQ 840 NGLTSLLPEP QVSLASSHAP VQGANEVEGA MNDDDGCFAS SAQDQESEGE EICEKDQS

Sequence ? help Back to Top

Protein Sequence Length: 898 aa Download sequence

MASRTCMNVS CGASSSTEWR KGWALRSGDF ATLCDKCGSA YEQSIFCDVF HLKDSGWREC  60
ASCGKNLHCG CIASKFLMEL HDSGGVNCIS CAKDLELHIT GTSEKLNGLG TPQVQNSGAL  120
QTLLVEDDNS DRIRLVQQGN KAEGNELRES LLLQSNDKTG SLVQMKHEEN ISLVKDVGYV  180
SSLEFNQATT NGLNETAKQE ICKADNGTKF TYDSLAFGCG NSNPLPGVSS DEKEDSMSSS  240
PLLLGSRSRH LIPKPARALF NVGLEPNASM VSQVRVARPP AEGRGRNQLL PRYWPRITDQ  300
ELQQISGASN STVVPLFEKM LSASDAGRIG RLVVPKACAE AYFPPISQPE GLPIRIQDIK  360
GKEWVFQFRF WPNNNSRMYV LEGVTPCIQS MQLQAGDTVT FSRMDPEGKL IMGFRKASSS  420
SIMQDTHPNA LSTAGGHSSE FFSSVFENLP MLSGHSSLLQ SLKGNMDPHL NLLPGYFNQP  480
GADMSWQKAE KHDDKSREGL LLSSMLAPER KRTRNIGSKS KRLLVDCQDA LELKLKWDEV  540
QDLLRPPPTV KPSKFVIEDH EFEEYEEPPV FGKRSIFLVR SNRGQEQWAQ CDDCSKWRKL  600
PVDVLLPSKW TCVENIWDQS MSSCSTPEEL TTRELEHILR LNKEFKRQRT LAFSRPIQDH  660
ESSGLDALAN AATLGDNVSD PGTASVATTT RHPRHRPGCS CIVCIQPPSG KGKHKPTCTC  720
NVCMTVKRRF KTLMMRKKKR QSEREAEIAQ KNQLKWGSRD ETELDNTSRH VSLNLGPSEN  780
EAQLTNESRS QSNLVETGKD QLDLNCHPDQ ENEVQGVSNR VSMMSLVQIA SLPLETYLKQ  840
NGLTSLLPEP QVSLASSHAP VQGANEVEGA MNDDDGCFAS SAQDQESEGE EICEKDQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	727	738	KRRFKTLMMRKK
2	727	740	KRRFKTLMMRKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	B3 family protein