PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023540491.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 325aa    MW: 36169.6 Da    PI: 6.7247
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023540491.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEd +l  ++ q+G+++W++I++  g+ R++k+c++rw +yl
   XP_023540491.1 14 RGQWTPEEDNKLSSYISQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 61
                     89********************************************97 PP
2Myb_DNA-binding42.31.7e-1368110246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++  E++ +v+++   G++ W++Ia+ +  gRt++++k++w++
   XP_023540491.1  68 GQFSDMEEQTIVKLHSVVGNR-WSLIAAQLT-GRTDNDVKNHWNT 110
                      789******************.********9.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MGRIPCCEKE NVKRGQWTPE EDNKLSSYIS QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY  60
LRPDLKHGQF SDMEEQTIVK LHSVVGNRWS LIAAQLTGRT DNDVKNHWNT KLKKKLSGMG  120
IDPVTHKPFS HLMAEIATTL APPQVAHLAE AALGCFKDEM LHLLTKKCVD FQLQQANVPP  180
GSSSGTYNHN NQNEKDGTVE NIKLGLSRAI QQSDLITPYK PWNSTDATTT NLEGTSNCFP  240
ASTSGFQYPP PSFGNEGDVP SWSQSMCTGS TCTGGEQQGQ LHEILEEHRE ELSEGGKEMR  300
NGTSIFSSDS VLWDLPCDDL MNPIV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-116MYB family protein