PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023540423.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 766aa MW: 84857.4 Da PI: 4.5995

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023540423.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13	0.00019	559	596	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R++i +++ eLr ++P+ a K s + L ++++Y+ Lq XP_023540423.1 559 RQQIQDRIKELRGIIPSgA------KCSIDSLLDRTIKYMLFLQ 596 89*************77......7777779******9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 766 aa Download sequence
MGETELGLVL NRICRSNRWS YGVFWSFDRR NSMLLTLEDF WYEEQVGLVA THMLQQVHML 60 GEGVIGTAAF TGKHRWVFSD AYVGVWSSAM FQDNLEFEQQ FFCGIKTVAV IPVQPYGVLQ 120 LGSTHKILES LEFLADTKKS LCRVHEETTP VASSTDICHV NELFTSIVSS TNSDDWSLSA 180 MHTNFSGKSY ASTDKQPVYD TSCFSKSSEN SVLTSSEPLP TSDVREQDAQ YPSYSDANML 240 ESCRNETEYG NNSTTFTPVS SGIGSLPIDN VQPSSQLLPM NEGELIDSIT SLPDFCDERL 300 TEDFMIDLPN ISFVDDLFQW FDSSPEIGTD GVTTALNHSL PTGVSTLSSN LVEARKFEDD 360 PSKTSVVSAQ SLITNGQDMQ DTKDRLFDSL GLATGCPLVK TWDNIVTEAH GSYSGGCNSM 420 STCTSKLATG SSDLPRKRLF WELGIEELLD GLSNTSSATK SSIENHQTIA SKRSKIERSS 480 LDRCIDVNLT QPLCTVDSFP STNEAVPKSR VSSWIDDSYS INIGGSILEP SHNKSEEPAK 540 TFKKRARPGE SNRPRPKDRQ QIQDRIKELR GIIPSGAKCS IDSLLDRTIK YMLFLQSVTK 600 YADKLKETNE PKLIDQENGV GISDKCTTER GGGGVTWAFK MGSTPMVCPV IVEDLSSPGQ 660 MLIEMLCEER GFFLEIAEMI RSYGLTILKG VMEVREEKIW AQFVVEVKLN ANRSVTRINV 720 FVSLMELLQQ ANIGGAEIAN ESSNVPIMDS FDKAITQSGY AYMKSR

Sequence ? help Back to Top

Protein Sequence Length: 766 aa Download sequence

MGETELGLVL NRICRSNRWS YGVFWSFDRR NSMLLTLEDF WYEEQVGLVA THMLQQVHML  60
GEGVIGTAAF TGKHRWVFSD AYVGVWSSAM FQDNLEFEQQ FFCGIKTVAV IPVQPYGVLQ  120
LGSTHKILES LEFLADTKKS LCRVHEETTP VASSTDICHV NELFTSIVSS TNSDDWSLSA  180
MHTNFSGKSY ASTDKQPVYD TSCFSKSSEN SVLTSSEPLP TSDVREQDAQ YPSYSDANML  240
ESCRNETEYG NNSTTFTPVS SGIGSLPIDN VQPSSQLLPM NEGELIDSIT SLPDFCDERL  300
TEDFMIDLPN ISFVDDLFQW FDSSPEIGTD GVTTALNHSL PTGVSTLSSN LVEARKFEDD  360
PSKTSVVSAQ SLITNGQDMQ DTKDRLFDSL GLATGCPLVK TWDNIVTEAH GSYSGGCNSM  420
STCTSKLATG SSDLPRKRLF WELGIEELLD GLSNTSSATK SSIENHQTIA SKRSKIERSS  480
LDRCIDVNLT QPLCTVDSFP STNEAVPKSR VSSWIDDSYS INIGGSILEP SHNKSEEPAK  540
TFKKRARPGE SNRPRPKDRQ QIQDRIKELR GIIPSGAKCS IDSLLDRTIK YMLFLQSVTK  600
YADKLKETNE PKLIDQENGV GISDKCTTER GGGGVTWAFK MGSTPMVCPV IVEDLSSPGQ  660
MLIEMLCEER GFFLEIAEMI RSYGLTILKG VMEVREEKIW AQFVVEVKLN ANRSVTRINV  720
FVSLMELLQQ ANIGGAEIAN ESSNVPIMDS FDKAITQSGY AYMKSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	1e-49	bHLH family protein