PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023540324.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 301aa MW: 33338.8 Da PI: 5.0197

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023540324.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.6	2.9e-18	25	72	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl XP_023540324.1 25 RGPWTVEEDIALINYIANHGDGRWNLLARCAGLKRTGKSCRLRWLNYL 72 89********************************************97 PP
2	Myb_DNA-binding	52.2	1.4e-16	78	121	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l++d++ ++G++ W++Ia++++ gRt++++k++w++ XP_023540324.1 78 RGNITLEEQLLILDLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 121 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence
MDGNKDRMID SGNFHGGDDD GDLRRGPWTV EEDIALINYI ANHGDGRWNL LARCAGLKRT 60 GKSCRLRWLN YLRPDVRRGN ITLEEQLLIL DLHSRWGNRW SKIAQHLPGR TDNEIKNYWR 120 TRVQKHAKQL KCDVNSKQFK DTMRYLWIPR LVERIQAAAG ATAVDGNGSY GSVAPPLMNG 180 SDFVSTSQVT PSYASENSSS GGGSSDGTQG SSVSELTDCY NNFGCFSVGY GQDTAPPPPP 240 PPPMQSSAVG FFNEGELDFQ AMEQSSCEWL AEDGGVDTSE NFWSTAGPGA DYFWLLQQQL 300 N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	7e-82	MYB family protein