PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023540277.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 211aa MW: 24182.1 Da PI: 5.8992

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023540277.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.1	3.7e-17	17	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l ++++ +G g W++ a+ g++Rt+k+c++rw++yl XP_023540277.1 17 KGPWTLEEDLILMNYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYL 64 79********************************************97 PP
2	Myb_DNA-binding	52.4	1.2e-16	70	113	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE+ l+ d++ ++G++ W++Iar ++ gRt++++k++w++ XP_023540277.1 70 RGNITPEEQVLIMDLHSKWGNR-WSKIARQLP-GRTDNEIKNYWRT 113 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MGTERLSSSQ DDNELRKGPW TLEEDLILMN YIANHGEGVW NSLAKAAGLK RTGKSCRLRW 60 LNYLRPGVRR GNITPEEQVL IMDLHSKWGN RWSKIARQLP GRTDNEIKNY WRTRIHKHMK 120 QQEEGEKVGE LMISIASGLE TNDDGGISPC SQVSSIHNVA EPMEISHDYL PSSQGDIEAM 180 AYEHTTWPRE NGASNDNYWS MEDLWSMQLL N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27810.1	2e-75	MYB family protein