PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023540265.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 434aa MW: 49453.5 Da PI: 7.061

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023540265.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.4e-17	234	280	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ed llv++v ++G + W+ Ia+++ gR +kqc++rw+++l XP_023540265.1 234 KGQWTPQEDRLLVQLVDEYGVKKWSQIAKMLE-GRVGKQCRERWHNHL 280 799***************************.***********97 PP
2	Myb_DNA-binding	52.5	1.1e-16	286	328	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W+++Ed +l++a+k G++ W+ Iar+++ gRt++ +k++w+ XP_023540265.1 286 KDTWSEDEDRILIEAHKDIGNR-WAEIARRLP-GRTENTIKNHWN 328 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MEFDSNFKDD LPLLSSFFSD KPESKRKLND DDNDDDTGEF SAMELATSPS SSKGLFHNLQ 60 LHNFDRDHDR DRDRDHNHNR YHQYLHHFPI NGSDSSSHHE LDRHQFSIDG SLQTLLAGMP 120 NQTFDPNFQP FGNEFSKDHT FENGAKFMHG LLGSRAVWTN FPGNFVPQFS QPPNSNSRSS 180 STHLGLGPAT AGRWFLDEIS YNTDNGYDQN KKKKRIQSRK ENRPPPTKLP NIVKGQWTPQ 240 EDRLLVQLVD EYGVKKWSQI AKMLEGRVGK QCRERWHNHL RPDIRKDTWS EDEDRILIEA 300 HKDIGNRWAE IARRLPGRTE NTIKNHWNAT KRRQNSKKLK GKYRDSNSNG SILQNYINSV 360 TAGDRKISDS MPQLVDSHSP AAVNGGGFYF EFGSGSGSGS GSGSGTEMEC LNLMQNDAMK 420 SEMDLLELIC QGNL

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MEFDSNFKDD LPLLSSFFSD KPESKRKLND DDNDDDTGEF SAMELATSPS SSKGLFHNLQ  60
LHNFDRDHDR DRDRDHNHNR YHQYLHHFPI NGSDSSSHHE LDRHQFSIDG SLQTLLAGMP  120
NQTFDPNFQP FGNEFSKDHT FENGAKFMHG LLGSRAVWTN FPGNFVPQFS QPPNSNSRSS  180
STHLGLGPAT AGRWFLDEIS YNTDNGYDQN KKKKRIQSRK ENRPPPTKLP NIVKGQWTPQ  240
EDRLLVQLVD EYGVKKWSQI AKMLEGRVGK QCRERWHNHL RPDIRKDTWS EDEDRILIEA  300
HKDIGNRWAE IARRLPGRTE NTIKNHWNAT KRRQNSKKLK GKYRDSNSNG SILQNYINSV  360
TAGDRKISDS MPQLVDSHSP AAVNGGGFYF EFGSGSGSGS GSGSGTEMEC LNLMQNDAMK  420
SEMDLLELIC QGNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27785.1	2e-72	MYB family protein