PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023540145.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 295aa    MW: 32703.5 Da    PI: 9.7147
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023540145.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.5e-1670115147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+ +G+ +W++Ia+ +  gR++k+c++rw++ 
   XP_023540145.1  70 RGHWRPAEDAKLKELVAHYGPQNWNLIAENLS-GRSGKSCRLRWFNQ 115
                      899*****************************.***********996 PP
2Myb_DNA-binding53.94.1e-17122165146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++ +eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
   XP_023540145.1 122 RKAFNEEEEERLLTAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 165
                      7899******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MNLQCFSDAF QTHGLFQNVA LMPPPPPASL DLSPPSHGGD SGRSNCEDRE KQEEDGKTNG  60
ARRRTKLCAR GHWRPAEDAK LKELVAHYGP QNWNLIAENL SGRSGKSCRL RWFNQLDPRI  120
NRKAFNEEEE ERLLTAHRLY GNKWAMIARL FPGRTDNAVK NHWHVIMARK RRQYSNLYRR  180
SSRKAFHKHN VSSESTISST VDESPTSASA SAPAPAPRWC SRKGVAAGVG KIGCWEKTEE  240
VMAAEQSSGS NSEVSGAESE ISTNLSLASG RDTMNGNGGH HMKMQFIDFL GVGAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-69MYB family protein