PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023539877.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 382aa MW: 43490.8 Da PI: 9.9227

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023539877.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.2	1.1e-18	67	155	2	86
trihelix 2 WtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W qe++ Li+a++ +eer ++++ + +W++v ++++++g++rs++qC++kw+nl ++ykk++e+e++ +++s ++p + ++e XP_023539877.1 67 WNLQETMILITAKKLDEERRNKAEqgtarkGSELRWKWVENYCWSQGCQRSQNQCNDKWDNLLRDYKKVREHESRA-CDQS-QIPSYWKME 155 ************99999997533333338899**************************************95.7666.899999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MSEPPTTSTE PQRQHQHQYE QQQHPHHLLH LPLIHGGAST GTTARINTAA ATSPSTVIVR 60 EYRKGNWNLQ ETMILITAKK LDEERRNKAE QGTARKGSEL RWKWVENYCW SQGCQRSQNQ 120 CNDKWDNLLR DYKKVREHES RACDQSQIPS YWKMEKHERK DNNLPSNMAF EVYQALNDVV 180 QRKLRGVSVA VVAGPPPPPS PAEGEAAAGT SSPAASESSS SSSGQKKEKR ERKRRRVGRS 240 IERSASAVAQ TLRTCEEQRE IRHQQLMELK KRRLQIQEAR NHIQGQGIAD LVAAVANLSG 300 INNRRRRRRS EEYECLYSGE EVRMLKEQNE AMQAELSSVK TELSQLRDQM PSLVRTMMHN 360 AMHNIPPPPP PPSMDPGGDG YK

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MSEPPTTSTE PQRQHQHQYE QQQHPHHLLH LPLIHGGAST GTTARINTAA ATSPSTVIVR  60
EYRKGNWNLQ ETMILITAKK LDEERRNKAE QGTARKGSEL RWKWVENYCW SQGCQRSQNQ  120
CNDKWDNLLR DYKKVREHES RACDQSQIPS YWKMEKHERK DNNLPSNMAF EVYQALNDVV  180
QRKLRGVSVA VVAGPPPPPS PAEGEAAAGT SSPAASESSS SSSGQKKEKR ERKRRRVGRS  240
IERSASAVAQ TLRTCEEQRE IRHQQLMELK KRRLQIQEAR NHIQGQGIAD LVAAVANLSG  300
INNRRRRRRS EEYECLYSGE EVRMLKEQNE AMQAELSSVK TELSQLRDQM PSLVRTMMHN  360
AMHNIPPPPP PPSMDPGGDG YK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	232	236	RKRRR
2	233	237	KRRRV
3	304	309	RRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	8e-46	Trihelix family protein