PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023539757.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

SBP

Protein Properties

Length: 778aa MW: 87002.4 Da PI: 6.7981

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023539757.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	114.9	4.5e-36	131	207	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv gCe+d+se+k yhrrh+vC +++a++v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k XP_023539757.1 131 RCQVFGCEVDISELKGYHRRHRVCLRCANATAVAIDGETKRYCQQCGKFHLLSDFDEGKRSCRRKLERHNNRRRRKP 207 6************************************************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 778 aa Download sequence
MEHPPPSPLP EPLYGAAAEM DLQLPIADDS SAVLWDLGDL LDFAGDDQFS LPLEHDNLPS 60 DSSHPLEIPS ETLPSNSDRI RKRDPRLTCP NFLAGRVPCA CPEIDAMLEE EAAASGKKRA 120 RTARVAAGTV RCQVFGCEVD ISELKGYHRR HRVCLRCANA TAVAIDGETK RYCQQCGKFH 180 LLSDFDEGKR SCRRKLERHN NRRRRKPADS TVAMESDRAG MHLEDVSCDG DAGKDDIVSN 240 NQTVQKEVVH LESEDGMVTP TVCSAPDLQS NIESGLTFMA MGEAQVDGGK DNFKSLASSY 300 CDNKSTYSSM CPTGRISFKL YDWNPAEFPR RLRLQIFEWL ANMPVELEGY IRPGCVILTA 360 FVAMPKFMWI KLLEDPTTHV HNFVVARGRP LWGRGSLLVY LNNMIFCAVE GGSVMKIEMD 420 MEAPRLHYVH PTCFEAGKPM EFVACGSHLQ QPKFRSLVSF DGKYLAHVQS FVIPHCQKEG 480 DTKQSNHQVF KICIPHTEHD LFGPAFVEVE NQSGLSNFIP ILIGDSETCS EMKTIQERLD 540 MSLPVEATGS SYKYCEHSSL RQKVYSELVT DISWLLKKPS SEPLQRIMNS SQIHRFTRLL 600 KFLISIDSTV ILGRVLEHLK IVMGNVESNV AANGFSYPDL RYFEKYLDYA TVVLQLNLRR 660 DRVSQSFSKN KLASVDPGTG LKMESEESDH FRAASGSTST SSVETRPLLN EKLREKIMVQ 720 ENSRKSCGLL FSGTVFRRQT ALFAITFAAV CLGICAALVH SHKVGEFAVS IRRCVMNT

Sequence ? help Back to Top

Protein Sequence Length: 778 aa Download sequence

MEHPPPSPLP EPLYGAAAEM DLQLPIADDS SAVLWDLGDL LDFAGDDQFS LPLEHDNLPS  60
DSSHPLEIPS ETLPSNSDRI RKRDPRLTCP NFLAGRVPCA CPEIDAMLEE EAAASGKKRA  120
RTARVAAGTV RCQVFGCEVD ISELKGYHRR HRVCLRCANA TAVAIDGETK RYCQQCGKFH  180
LLSDFDEGKR SCRRKLERHN NRRRRKPADS TVAMESDRAG MHLEDVSCDG DAGKDDIVSN  240
NQTVQKEVVH LESEDGMVTP TVCSAPDLQS NIESGLTFMA MGEAQVDGGK DNFKSLASSY  300
CDNKSTYSSM CPTGRISFKL YDWNPAEFPR RLRLQIFEWL ANMPVELEGY IRPGCVILTA  360
FVAMPKFMWI KLLEDPTTHV HNFVVARGRP LWGRGSLLVY LNNMIFCAVE GGSVMKIEMD  420
MEAPRLHYVH PTCFEAGKPM EFVACGSHLQ QPKFRSLVSF DGKYLAHVQS FVIPHCQKEG  480
DTKQSNHQVF KICIPHTEHD LFGPAFVEVE NQSGLSNFIP ILIGDSETCS EMKTIQERLD  540
MSLPVEATGS SYKYCEHSSL RQKVYSELVT DISWLLKKPS SEPLQRIMNS SQIHRFTRLL  600
KFLISIDSTV ILGRVLEHLK IVMGNVESNV AANGFSYPDL RYFEKYLDYA TVVLQLNLRR  660
DRVSQSFSKN KLASVDPGTG LKMESEESDH FRAASGSTST SSVETRPLLN EKLREKIMVQ  720
ENSRKSCGLL FSGTVFRRQT ALFAITFAAV CLGICAALVH SHKVGEFAVS IRRCVMNT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	193	205	RRKLERHNNRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.2	0.0	SBP family protein