PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023539307.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 542aa MW: 59589.7 Da PI: 6.9202

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023539307.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58.4	1.9e-18	161	247	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L+++++e+ ++l+rg+l++ +Weev++ + r ++ ++s +qCk+k +nl+kryk ++++++++ s s++p+f+q+e XP_023539307.1 161 EWSDAAISCLLDVYTEKFTQLNRGNLRGRDWEEVAATVseRCEKQSKSVEQCKNKVDNLKKRYKLERQRMSDG-GISISHWPWFKQME 247 5***********************************777778899*********************9.677889*****8 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MASCDDDFSL LSDDHHHHNH HQSTTNHHHV PNPQHIHQSY VPHRFTPRSS SVHPPPPPPP 60 SSQAAQPILA PSGSPKKIGG RIDKEEEDDD GEDYGDATFC SSSFDNGDQN RIGVGVGVDV 120 DVRVEKRKDQ SDELGEEGGS YSYKRAKPSS SGGEYRKDRE EWSDAAISCL LDVYTEKFTQ 180 LNRGNLRGRD WEEVAATVSE RCEKQSKSVE QCKNKVDNLK KRYKLERQRM SDGGISISHW 240 PWFKQMEQIV GNSLTMKVVS DEDRSVGSPA TTPRISKRYV IPAPNTTGHM NNLKPKSVSS 300 PRWRRVVFKI SGTALTGTGP NNIDPKVTMA IAREVVIACR LGVEVAIVVG GRNFFCGDSW 360 VTATGLDRCT AYQIGMMATV MNSILLQSAI EKMGVQTRVQ SAFMLHEVAE PYSRQRAIRH 420 LEKGRVVIFG GIGTGTGNPL FSTDTAAALR ASEIHAEAVL KGTNVDGVYD CSSQDNNFTF 480 KHISFRELAS SGATSMDMTA LTFCEENNIP VVVFNLLEPG NISKALCGDQ VGTLIDQNGR 540 IS

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MASCDDDFSL LSDDHHHHNH HQSTTNHHHV PNPQHIHQSY VPHRFTPRSS SVHPPPPPPP  60
SSQAAQPILA PSGSPKKIGG RIDKEEEDDD GEDYGDATFC SSSFDNGDQN RIGVGVGVDV  120
DVRVEKRKDQ SDELGEEGGS YSYKRAKPSS SGGEYRKDRE EWSDAAISCL LDVYTEKFTQ  180
LNRGNLRGRD WEEVAATVSE RCEKQSKSVE QCKNKVDNLK KRYKLERQRM SDGGISISHW  240
PWFKQMEQIV GNSLTMKVVS DEDRSVGSPA TTPRISKRYV IPAPNTTGHM NNLKPKSVSS  300
PRWRRVVFKI SGTALTGTGP NNIDPKVTMA IAREVVIACR LGVEVAIVVG GRNFFCGDSW  360
VTATGLDRCT AYQIGMMATV MNSILLQSAI EKMGVQTRVQ SAFMLHEVAE PYSRQRAIRH  420
LEKGRVVIFG GIGTGTGNPL FSTDTAAALR ASEIHAEAVL KGTNVDGVYD CSSQDNNFTF  480
KHISFRELAS SGATSMDMTA LTFCEENNIP VVVFNLLEPG NISKALCGDQ VGTLIDQNGR  540
IS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	0.0	Trihelix family protein