PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023539009.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

SBP

Protein Properties

Length: 365aa MW: 40500.2 Da PI: 8.0079

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023539009.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.6	5.6e-41	134	211	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +ak+yhrrh+vCe+hskap+v+v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++ XP_023539009.1 134 RCQVEGCHVALVNAKDYHRRHRVCEMHSKAPKVVVVGLEQRFCQQCSRFHVISEFDDSKRSCRRRLAGHNERRRKSSQ 211 6**************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MPISSPTISN LSSSFPSFAA LLAVLEMEIC GNLIGQSNAG RDQTANPTTV WEHLNSSRFH 60 LDWATANSTH GDAHQHHQCL FPGDHHQGGH FHRDPHLMCL KLGKRHYFED ATAASVVGKR 120 GKPLYSTVPT SVPRCQVEGC HVALVNAKDY HRRHRVCEMH SKAPKVVVVG LEQRFCQQCS 180 RFHVISEFDD SKRSCRRRLA GHNERRRKSS QESVAARNWS GENKSRTGKI AYIPSPTGRA 240 LSLLSSKNES WATSSELSLR SSAALRELIA ENRAAILARQ LILERDWHSN HTRTADDFGG 300 GGVGLEQSWE KMHDDGNGGA HVTLDLMQAP RTAFGVLSVS GKSKEEDEEC GELWNSFQDH 360 DSNVV

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MPISSPTISN LSSSFPSFAA LLAVLEMEIC GNLIGQSNAG RDQTANPTTV WEHLNSSRFH  60
LDWATANSTH GDAHQHHQCL FPGDHHQGGH FHRDPHLMCL KLGKRHYFED ATAASVVGKR  120
GKPLYSTVPT SVPRCQVEGC HVALVNAKDY HRRHRVCEMH SKAPKVVVVG LEQRFCQQCS  180
RFHVISEFDD SKRSCRRRLA GHNERRRKSS QESVAARNWS GENKSRTGKI AYIPSPTGRA  240
LSLLSSKNES WATSSELSLR SSAALRELIA ENRAAILARQ LILERDWHSN HTRTADDFGG  300
GGVGLEQSWE KMHDDGNGGA HVTLDLMQAP RTAFGVLSVS GKSKEEDEEC GELWNSFQDH  360
DSNVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27370.3	1e-39	SBP family protein