PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023538952.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

NAC

Protein Properties

Length: 492aa MW: 56015.8 Da PI: 6.516

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023538952.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158	3.8e-49	13	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp+GfrFhPtdeel+++yLk+k+ g++ + + i++vdi+k+ePwdLp + +++e+ew+fF+ +d ky++++r+nratk+gyWk+tgkd+++l XP_023538952.1 13 LPVGFRFHPTDEELINHYLKNKMLGRESLV-DYIRQVDICKHEPWDLPFlsNDHTSEQEWFFFAAQDLKYSNSRRSNRATKTGYWKSTGKDRKIL 106 79***********************777.99***********4334445778********************************* PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++l+g+kktLvfy+gr ++g +t+Wv+hey+l XP_023538952.1 107 APrTKKLIGTKKTLVFYSGRVSNGIRTNWVIHEYQL 142 9867788*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence
MADCIVLPSG DLLPVGFRFH PTDEELINHY LKNKMLGRES LVDYIRQVDI CKHEPWDLPF 60 LSNDHTSEQE WFFFAAQDLK YSNSRRSNRA TKTGYWKSTG KDRKILAPRT KKLIGTKKTL 120 VFYSGRVSNG IRTNWVIHEY QLHSDPQFAQ LRPFVICLLK KKLDENDVLI CDEAEQNGPM 180 NLTFDNEVSV NQNKEVSGYD FSELESLLFS DREPISMDFQ ANNSHVTQVN EPNDEAIDIE 240 EIYFHEGTPN SSISDFNWKE YLEMVEEDQG GALNGDTGMY ATLNLQGNST SHSMFDEHSS 300 RVPTQTTPII KESRRSPLTS KIFKYGGEED LSSVRPRGDE LQTNGISYLS DDPDRETITL 360 RFQGQPRSDK VVNHAKDSQN IQWKRKTQLQ VVSSPDKAKA VSKWKKVDRA AATSNKDIVV 420 DRESEVKSLV AHQSSSTGRW SVESRGKRCS SILTTKCIHH RSSPASAYVA RVCIGLILFF 480 VVARDMLLDG NW

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence

MADCIVLPSG DLLPVGFRFH PTDEELINHY LKNKMLGRES LVDYIRQVDI CKHEPWDLPF  60
LSNDHTSEQE WFFFAAQDLK YSNSRRSNRA TKTGYWKSTG KDRKILAPRT KKLIGTKKTL  120
VFYSGRVSNG IRTNWVIHEY QLHSDPQFAQ LRPFVICLLK KKLDENDVLI CDEAEQNGPM  180
NLTFDNEVSV NQNKEVSGYD FSELESLLFS DREPISMDFQ ANNSHVTQVN EPNDEAIDIE  240
EIYFHEGTPN SSISDFNWKE YLEMVEEDQG GALNGDTGMY ATLNLQGNST SHSMFDEHSS  300
RVPTQTTPII KESRRSPLTS KIFKYGGEED LSSVRPRGDE LQTNGISYLS DDPDRETITL  360
RFQGQPRSDK VVNHAKDSQN IQWKRKTQLQ VVSSPDKAKA VSKWKKVDRA AATSNKDIVV  420
DRESEVKSLV AHQSSSTGRW SVESRGKRCS SILTTKCIHH RSSPASAYVA RVCIGLILFF  480
VVARDMLLDG NW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.3	6e-51	NAC family protein